Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CJ12567_RS03360 Genome accession   NZ_CP028909
Coordinates   637434..637871 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain 12567     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632434..642871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12567_RS09095 - 632926..633087 (+) 162 WP_250601826.1 hypothetical protein -
  CJ12567_RS09100 - 633062..634078 (+) 1017 WP_250601825.1 sensor histidine kinase KdpD -
  CJ12567_RS09105 - 634102..634746 (+) 645 WP_079261384.1 DUF4118 domain-containing protein -
  CJ12567_RS03345 (CJ12567_0647) uvrB 634848..636821 (-) 1974 WP_052788473.1 excinuclease ABC subunit UvrB -
  CJ12567_RS03350 (CJ12567_0648) - 636975..637205 (+) 231 WP_002852327.1 hypothetical protein -
  CJ12567_RS03355 (CJ12567_0649) - 637195..637437 (+) 243 WP_002854947.1 hypothetical protein -
  CJ12567_RS03360 (CJ12567_0650) Cj0683 637434..637871 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CJ12567_RS03365 (CJ12567_0651) priA 637853..639706 (+) 1854 WP_002852169.1 primosomal protein N' -
  CJ12567_RS03375 (CJ12567_0652) cipA 639716..641109 (-) 1394 Protein_647 DUF2972 domain-containing protein -
  CJ12567_RS03380 (CJ12567_0653) ispG 641255..642328 (+) 1074 WP_002859602.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=288393 CJ12567_RS03360 WP_002852324.1 637434..637871(+) (Cj0683) [Campylobacter jejuni strain 12567]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=288393 CJ12567_RS03360 WP_002852324.1 637434..637871(+) (Cj0683) [Campylobacter jejuni strain 12567]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment