Detailed information NTG0028839

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: RBAM_RS02010
• Genome accession: NC_009725
• Coordinates: 400223..401371 (+)
• Length: 382 a.a.
• NCBI ID: WP_012116798.1
• Uniprot ID: A3KLC9
• Organism: Bacillus velezensis FZB42
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 395223..406371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBAM_RS01990 (RBAM_003970)	-	395620..396303 (-)	684	WP_012116795.1	ABC transporter ATP-binding protein	-
RBAM_RS01995 (RBAM_003980)	-	396318..397754 (-)	1437	WP_012116796.1	ABC transporter permease	-
RBAM_RS02000 (RBAM_003990)	-	397967..398650 (+)	684	WP_007410267.1	response regulator transcription factor	-
RBAM_RS02005 (RBAM_004000)	-	398637..400070 (+)	1434	WP_162303988.1	sensor histidine kinase	-
RBAM_RS02010 (RBAM_004010)	rapC	400223..401371 (+)	1149	WP_012116798.1	Rap family tetratricopeptide repeat protein	Regulator
RBAM_RS02015 (RBAM_004020)	phrC	401355..401474 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
RBAM_RS02020 (RBAM_004030)	-	401623..401733 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
RBAM_RS02025 (RBAM_004040)	-	401813..403177 (-)	1365	WP_012116801.1	aspartate kinase	-
RBAM_RS02030 (RBAM_004050)	ceuB	403591..404544 (+)	954	WP_012116802.1	ABC transporter permease	Machinery gene
RBAM_RS02035 (RBAM_004060)	-	404534..405481 (+)	948	WP_012116803.1	iron chelate uptake ABC transporter family permease subunit	-
RBAM_RS02040 (RBAM_004070)	-	405475..406233 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45490.68 Da
• Isoelectric Point: 4.9916

>NTDB_id=28839 RBAM_RS02010 WP_012116798.1 400223..401371(+) (rapC) [Bacillus velezensis FZB42]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRAQYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=28839 RBAM_RS02010 WP_012116798.1 400223..401371(+) (rapC) [Bacillus velezensis FZB42]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCAGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

3D structure

• AlphaFold DB: A3KLC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	56.842	99.476	0.565