Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC64_RS00680 Genome accession   NZ_CP034289
Coordinates   129843..130310 (+) Length   155 a.a.
NCBI ID   WP_005378657.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140722001-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 124843..135310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC64_RS00655 (EHC64_00680) - 125574..126764 (+) 1191 WP_031779006.1 hypothetical protein -
  EHC64_RS00660 (EHC64_00685) - 126776..127156 (+) 381 WP_005378647.1 STAS-like domain-containing protein -
  EHC64_RS00665 (EHC64_00690) - 127162..127707 (+) 546 WP_005378650.1 hypothetical protein -
  EHC64_RS00670 (EHC64_00695) - 127760..128461 (-) 702 WP_236578027.1 DUF4276 family protein -
  EHC64_RS00675 (EHC64_00700) - 128422..129525 (-) 1104 WP_000034199.1 AAA family ATPase -
  EHC64_RS00680 (EHC64_00710) radC 129843..130310 (+) 468 WP_005378657.1 RadC family protein Machinery gene
  EHC64_RS00685 (EHC64_00715) - 130307..130756 (+) 450 WP_005378658.1 DUF2787 family protein -
  EHC64_RS00690 (EHC64_00720) - 130795..131226 (+) 432 WP_005378659.1 DUF2787 family protein -
  EHC64_RS00695 (EHC64_00725) - 131234..131572 (-) 339 WP_005378660.1 YkvA family protein -
  EHC64_RS00700 (EHC64_00730) - 131712..131963 (+) 252 WP_159408066.1 hypothetical protein -
  EHC64_RS00705 (EHC64_00735) - 132143..133111 (+) 969 WP_005378662.1 YafY family protein -
  EHC64_RS00710 (EHC64_00740) - 133108..133329 (-) 222 WP_005378664.1 AlpA family transcriptional regulator -
  EHC64_RS00715 (EHC64_00745) - 133407..134396 (+) 990 WP_159408067.1 GTPase family protein -
  EHC64_RS00720 (EHC64_00750) - 134507..134953 (+) 447 WP_005378667.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17256.67 Da        Isoelectric Point: 6.2210

>NTDB_id=288385 EHC64_RS00680 WP_005378657.1 129843..130310(+) (radC) [Vibrio parahaemolyticus strain 20140722001-1]
MRENNYYFDGPVTADRVLDAAAEILAARALRGDQYCNPEATKTYLSCKLKHHEREVFAVMFLDNQHRLIAFEELFFGTID
SASVYPREVLKAALKINAAALIFAHNHPSGDATPSQADKQITQRLKEALALVDIRVLDHIVVGDSAISFAERGLL

Nucleotide


Download         Length: 468 bp        

>NTDB_id=288385 EHC64_RS00680 WP_005378657.1 129843..130310(+) (radC) [Vibrio parahaemolyticus strain 20140722001-1]
ATGCGCGAAAATAACTACTATTTTGATGGTCCTGTTACGGCGGACAGGGTGCTCGACGCGGCCGCAGAAATCCTTGCTGC
ACGCGCCCTCCGAGGCGATCAATATTGCAATCCTGAAGCAACAAAAACCTATTTATCTTGCAAATTAAAACACCATGAAA
GAGAGGTGTTTGCGGTGATGTTTCTAGATAATCAGCATCGCCTTATTGCCTTTGAAGAGCTGTTCTTTGGCACAATTGAT
TCGGCAAGTGTTTATCCCCGAGAAGTCCTCAAAGCGGCTTTAAAAATCAATGCCGCCGCACTCATCTTTGCTCACAATCA
CCCTTCTGGCGATGCCACTCCTTCCCAAGCCGATAAACAAATTACGCAAAGGCTTAAAGAGGCTTTAGCGCTGGTGGACA
TTCGAGTTCTTGATCATATCGTGGTTGGTGATAGCGCCATCTCTTTTGCAGAAAGGGGGCTACTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.333

77.419

0.452

Multiple sequence alignment