Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC70_RS15190 Genome accession   NZ_CP034285
Coordinates   3098047..3098520 (+) Length   157 a.a.
NCBI ID   WP_159356788.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140624012-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3093047..3103520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC70_RS15180 (EHC70_15380) - 3094194..3095690 (-) 1497 WP_000247890.1 restriction endonuclease subunit S -
  EHC70_RS15185 (EHC70_15385) - 3095684..3097708 (-) 2025 WP_159356787.1 N-6 DNA methylase -
  EHC70_RS15190 (EHC70_15390) radC 3098047..3098520 (+) 474 WP_159356788.1 RadC family protein Machinery gene
  EHC70_RS15195 (EHC70_15395) - 3098517..3098954 (+) 438 WP_201448931.1 DUF2787 domain-containing protein -
  EHC70_RS15200 (EHC70_15400) - 3099004..3099447 (+) 444 WP_159356790.1 DUF2787 domain-containing protein -
  EHC70_RS15205 (EHC70_15405) - 3099451..3099627 (+) 177 WP_017050835.1 hypothetical protein -
  EHC70_RS15210 (EHC70_15410) - 3099766..3100500 (+) 735 WP_159404204.1 WYL domain-containing protein -
  EHC70_RS15215 (EHC70_15415) - 3100531..3100899 (+) 369 WP_159404205.1 hypothetical protein -
  EHC70_RS15220 (EHC70_15420) - 3100947..3101174 (+) 228 WP_142736792.1 hypothetical protein -
  EHC70_RS15225 (EHC70_15430) - 3101318..3101641 (-) 324 WP_094129605.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17791.09 Da        Isoelectric Point: 5.2897

>NTDB_id=288371 EHC70_RS15190 WP_159356788.1 3098047..3098520(+) (radC) [Vibrio parahaemolyticus strain 20140624012-1]
MNPKTSDYQKQQRYQENEILEHAAEILATRYVRGDALINPDATKEYVRCKLGSYEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKVVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=288371 EHC70_RS15190 WP_159356788.1 3098047..3098520(+) (radC) [Vibrio parahaemolyticus strain 20140624012-1]
ATGAATCCCAAAACTTCCGATTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCAGAGATACT
GGCTACGCGCTACGTGCGCGGTGATGCCCTAATTAACCCTGATGCCACTAAAGAGTATGTGCGCTGCAAGTTAGGCAGCT
ATGAGCGCGAAGTGTTTGCCTTATTGCTACTGGATAACCAAAACCGACTGATTGAGTTTAAAGAGCTGTTTCAAGGAACG
GTGGATGCAGCCAGCGTCTACCCAAGAGAAGTAGTGAAAGTAGTGTTGGAAGTCAATGCCGCAGCGGTGATATTTGCCCA
TAACCATCCATCCGGTGACTCAACACCGTCTCAAGCCGATAGACGCATAACCGAAAGACTCAAAGACGCTTTAGCTCTAG
TGGATGTTCGCGTTCTTGACCATATCGTGACAGGCGATACCTGCACCTCATTTGCTGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.445

87.261

0.414