Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RBAM_RS01810 Genome accession   NC_009725
Coordinates   339029..339427 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis FZB42     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 334029..344427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAM_RS01785 (RBAM_003550) - 334200..335402 (+) 1203 WP_012116765.1 GTP-binding protein -
  RBAM_RS01790 (RBAM_003560) - 335467..336603 (+) 1137 WP_012116766.1 zinc-dependent alcohol dehydrogenase -
  RBAM_RS01795 (RBAM_003570) - 336618..337052 (+) 435 WP_012116767.1 RDD family protein -
  RBAM_RS01800 (RBAM_003580) - 337170..337448 (+) 279 WP_263612330.1 YckD family protein -
  RBAM_RS01805 (RBAM_003590) - 337552..338988 (+) 1437 WP_012116768.1 glycoside hydrolase family 1 protein -
  RBAM_RS01810 (RBAM_003600) nin/comJ 339029..339427 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  RBAM_RS01815 (RBAM_003610) nucA/comI 339448..339885 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RBAM_RS01820 (RBAM_003620) hxlB 340244..340801 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  RBAM_RS01825 (RBAM_003630) hxlA 340798..341433 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  RBAM_RS01830 (RBAM_003640) - 341665..342027 (+) 363 WP_012116770.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=28837 RBAM_RS01810 WP_007609299.1 339029..339427(-) (nin/comJ) [Bacillus velezensis FZB42]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=28837 RBAM_RS01810 WP_007609299.1 339029..339427(-) (nin/comJ) [Bacillus velezensis FZB42]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGGGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCCGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment