Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DBV39_RS01560 Genome accession   NZ_CP028901
Coordinates   353475..354842 (+) Length   455 a.a.
NCBI ID   WP_108620057.1    Uniprot ID   A0A2R4XFN3
Organism   Orrella marina strain HZ20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 348475..359842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV39_RS01540 (DBV39_01540) hpnD 349760..350680 (-) 921 WP_108620054.1 presqualene diphosphate synthase HpnD -
  DBV39_RS01545 (DBV39_01545) hpnC 350680..351507 (-) 828 WP_108620055.1 squalene synthase HpnC -
  DBV39_RS01555 (DBV39_01555) alr 352009..353189 (+) 1181 Protein_293 alanine racemase -
  DBV39_RS01560 (DBV39_01560) radA 353475..354842 (+) 1368 WP_108620057.1 DNA repair protein RadA Machinery gene
  DBV39_RS01565 (DBV39_01565) - 354911..357409 (+) 2499 WP_108620058.1 ABC transporter permease -
  DBV39_RS01570 (DBV39_01570) - 357555..357785 (+) 231 WP_108620059.1 hypothetical protein -
  DBV39_RS01575 (DBV39_01575) - 357782..358282 (+) 501 WP_108620060.1 3-deoxy-D-manno-octulosonic acid kinase -
  DBV39_RS19355 - 358308..358607 (-) 300 WP_159078726.1 hypothetical protein -
  DBV39_RS01580 (DBV39_01580) - 358639..359733 (+) 1095 WP_108620061.1 polyamine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48337.71 Da        Isoelectric Point: 8.0223

>NTDB_id=288367 DBV39_RS01560 WP_108620057.1 353475..354842(+) (radA) [Orrella marina strain HZ20]
MSKIRTRYVCQACGATSPKWLGQCSGCQAWNTLEETRVNETPVAAHRYESMSGSQAQLQRLADVQARELPRMPTGIHEFD
RVLGGGLVTGAVVLIGGDPGIGKSTLLLQALAAISQTARVLYVTGEESPDQVALRARRLGVDGAAVDLLPEIRLDLIEAQ
LRDHPPAVAVIDSIQTIYSAQLSAAPGSVSQVRECAAQLTRLAKQSGVPIVMIGHVTKDGSLAGPRVLEHMVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHSRDVAGSCVMATQEGTRPLLVEIQALVDTAHVPN
PRRLALGLEGHRLAMLLAVLHRHAGVSTADQDVFVNAVGGVRITEPGADLPILLAILSSLKDRALPAGLVSFGEIGLAGE
VRPAVRGQERLREAAKLGFSVAIVPAANAPKQAIEGLRVIPVSRLQEAIDAVRGL

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=288367 DBV39_RS01560 WP_108620057.1 353475..354842(+) (radA) [Orrella marina strain HZ20]
ATGTCCAAGATCAGGACCCGCTATGTTTGTCAGGCATGCGGAGCAACCAGTCCCAAATGGCTGGGACAGTGCTCAGGATG
CCAGGCATGGAACACCCTTGAAGAAACGCGTGTAAACGAGACACCTGTCGCGGCCCATCGCTACGAGTCGATGAGCGGTA
GTCAGGCGCAGTTGCAGCGACTGGCTGACGTGCAGGCGCGTGAGCTGCCACGCATGCCGACCGGCATTCACGAATTTGAC
CGCGTGCTGGGCGGTGGTCTGGTGACCGGGGCAGTGGTACTGATTGGTGGTGATCCTGGAATCGGTAAATCTACGTTGCT
GCTGCAAGCGCTCGCAGCAATCTCCCAGACTGCGCGTGTCCTGTATGTCACGGGTGAAGAGTCGCCAGACCAGGTCGCCT
TGCGTGCCAGGCGCCTCGGTGTGGATGGCGCGGCAGTCGATCTGTTACCGGAAATCCGGCTGGATCTGATCGAAGCCCAG
TTGCGCGATCACCCACCCGCTGTTGCCGTGATTGATTCCATCCAGACCATCTACAGCGCCCAGCTGAGTGCTGCCCCGGG
TTCTGTGTCGCAGGTGCGCGAGTGTGCTGCACAGTTGACCCGTCTTGCGAAGCAGAGCGGGGTGCCTATCGTCATGATCG
GACACGTCACCAAGGACGGTTCGCTGGCAGGTCCGCGCGTGCTGGAGCATATGGTCGATACGGTACTGTATTTTGAGGGG
GATACCCACTCTTCGTTTCGTCTGGTCCGGGCGTTCAAGAACCGGTTCGGCGCGGTCAACGAACTGGGTGTTTTTGCGAT
GACCGACCGAGGCTTGCGAGGTGTTGCGAACCCTTCTGCACTTTTTCTGTCACAACACTCGCGCGATGTTGCTGGTTCCT
GCGTGATGGCGACACAGGAAGGGACTCGCCCGCTTCTGGTGGAGATCCAGGCGCTGGTCGATACCGCGCATGTGCCGAAT
CCGCGCCGCCTTGCGCTGGGTCTGGAAGGTCATCGGCTGGCGATGCTGCTGGCAGTGTTACACCGCCATGCAGGCGTATC
GACCGCTGACCAGGACGTGTTCGTCAATGCCGTCGGTGGCGTGCGCATCACCGAGCCAGGCGCAGACTTGCCCATTTTGC
TGGCGATTCTGTCCTCGCTCAAGGATCGGGCACTGCCCGCAGGGCTTGTGTCGTTTGGCGAGATTGGACTCGCAGGTGAA
GTCAGGCCGGCTGTTCGCGGTCAGGAGCGTTTGCGCGAGGCGGCCAAGCTCGGGTTTTCTGTGGCGATCGTCCCTGCCGC
TAACGCTCCCAAGCAGGCAATCGAAGGATTGCGTGTGATTCCGGTCAGCCGATTGCAAGAAGCGATTGATGCTGTGCGAG
GGTTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4XFN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.253

100

0.486
  radA Streptococcus mitis SK321

45.197

100

0.455
  radA Streptococcus pneumoniae D39

45.295

100

0.455
  radA Streptococcus pneumoniae TIGR4

45.295

100

0.455
  radA Streptococcus pneumoniae R6

45.295

100

0.455
  radA Streptococcus pneumoniae Rx1

45.295

100

0.455
  radA Streptococcus mitis NCTC 12261

45.077

100

0.453

Multiple sequence alignment