Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC70_RS14140 Genome accession   NZ_CP034285
Coordinates   2898725..2899201 (+) Length   158 a.a.
NCBI ID   WP_086585525.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140624012-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2893725..2904201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC70_RS14115 (EHC70_14320) - 2893910..2895151 (+) 1242 WP_159404188.1 integrase domain-containing protein -
  EHC70_RS14120 (EHC70_14325) - 2895208..2895651 (-) 444 WP_159404189.1 hypothetical protein -
  EHC70_RS14125 (EHC70_14330) - 2895757..2897829 (-) 2073 WP_159404190.1 ATP-binding protein -
  EHC70_RS14130 (EHC70_14335) - 2898024..2898215 (-) 192 WP_086590762.1 AlpA family transcriptional regulator -
  EHC70_RS14135 (EHC70_14340) - 2898343..2898549 (-) 207 WP_140104102.1 AlpA family transcriptional regulator -
  EHC70_RS14140 (EHC70_14345) radC 2898725..2899201 (+) 477 WP_086585525.1 RadC family protein Machinery gene
  EHC70_RS14145 (EHC70_14350) - 2899307..2900074 (+) 768 WP_140104103.1 YafY family protein -
  EHC70_RS26315 - 2900462..2900611 (+) 150 WP_236578026.1 hypothetical protein -
  EHC70_RS26465 - 2900624..2900749 (+) 126 WP_257969956.1 hypothetical protein -
  EHC70_RS26585 (EHC70_14360) - 2900787..2901272 (-) 486 WP_159404191.1 inovirus-type Gp2 protein -
  EHC70_RS14160 (EHC70_14365) - 2901260..2901451 (-) 192 WP_159404192.1 hypothetical protein -
  EHC70_RS14165 (EHC70_14370) - 2901860..2902786 (+) 927 WP_140103794.1 hypothetical protein -
  EHC70_RS14170 (EHC70_14375) - 2903208..2904011 (+) 804 WP_025533614.1 MetQ/NlpA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17634.84 Da        Isoelectric Point: 5.2122

>NTDB_id=288365 EHC70_RS14140 WP_086585525.1 2898725..2899201(+) (radC) [Vibrio parahaemolyticus strain 20140624012-1]
MDITSHQTYSFDGPVSAHQVLEKAAEIIAERYLRGDAFCSPQATKDFVKFKLGDYEREVFAVLYLDNQHRLIEYEELFFG
TINAASVYPREVAKSSLKHNSAAVIFAHNHPSGDPSPSVSDKQITQRLKEALALLDINVLDHIVVGESTVSLAEQGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=288365 EHC70_RS14140 WP_086585525.1 2898725..2899201(+) (radC) [Vibrio parahaemolyticus strain 20140624012-1]
ATGGACATCACAAGCCACCAGACCTACTCGTTTGACGGTCCGGTATCAGCGCATCAAGTTTTAGAGAAAGCAGCGGAAAT
CATCGCAGAGCGTTACTTACGAGGCGATGCATTCTGTTCACCACAAGCGACAAAGGATTTTGTTAAGTTCAAGCTAGGTG
ATTATGAAAGGGAGGTATTTGCGGTTCTGTATCTCGACAATCAACACAGGCTCATTGAGTATGAAGAGCTGTTCTTCGGG
ACGATTAACGCAGCCAGCGTTTATCCTAGAGAGGTCGCTAAATCCAGCTTAAAGCACAATTCAGCCGCTGTAATATTCGC
CCACAACCATCCATCAGGCGACCCAAGCCCCTCAGTATCAGATAAGCAAATCACACAACGCCTCAAGGAAGCATTAGCGC
TACTCGACATCAATGTCCTAGACCACATTGTAGTAGGCGAAAGCACCGTCTCTCTTGCTGAACAAGGGTGGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.905

86.709

0.424