Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DBQ98_RS14470 Genome accession   NZ_CP028900
Coordinates   2908777..2909382 (-) Length   201 a.a.
NCBI ID   WP_023231422.1    Uniprot ID   A0A3V7EYX1
Organism   Salmonella enterica subsp. enterica serovar California strain CD-SL01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2903777..2914382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ98_RS14455 (DBQ98_15090) helD 2903994..2906048 (-) 2055 WP_023231792.1 DNA helicase IV -
  DBQ98_RS14460 (DBQ98_15095) - 2906172..2906618 (+) 447 WP_001261222.1 YccF domain-containing protein -
  DBQ98_RS14465 (DBQ98_15100) yccS 2906637..2908790 (+) 2154 WP_000950881.1 YccS family putative transporter -
  DBQ98_RS14470 (DBQ98_15105) sxy/tfoX 2908777..2909382 (-) 606 WP_023231422.1 TfoX/Sxy family DNA transformation protein Regulator
  DBQ98_RS14475 (DBQ98_15110) sulA 2909599..2910108 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  DBQ98_RS14480 (DBQ98_15115) ompA 2910465..2911517 (+) 1053 WP_001670727.1 porin OmpA -
  DBQ98_RS14485 (DBQ98_15120) matP 2911589..2912041 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  DBQ98_RS14490 (DBQ98_15125) - 2912227..2913987 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23202.99 Da        Isoelectric Point: 8.7403

>NTDB_id=288358 DBQ98_RS14470 WP_023231422.1 2908777..2909382(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar California strain CD-SL01]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYVLEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=288358 DBQ98_RS14470 WP_023231422.1 2908777..2909382(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar California strain CD-SL01]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGTCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V7EYX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment