Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RBAM_RS00230 Genome accession   NC_009725
Coordinates   45611..45901 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis FZB42     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40611..50901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAM_RS00190 (RBAM_000380) darA 40628..40957 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  RBAM_RS00195 (RBAM_000390) - 40970..41410 (+) 441 WP_011996167.1 YaaR family protein -
  RBAM_RS00200 (RBAM_000400) holB 41422..42411 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  RBAM_RS00205 (RBAM_000410) ricT 42414..43241 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  RBAM_RS00210 (RBAM_000420) yabA 43256..43615 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  RBAM_RS00215 (RBAM_000430) - 43676..44419 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RBAM_RS00220 (RBAM_000440) - 44406..44705 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  RBAM_RS00225 (RBAM_000450) rsmI 44680..45561 (+) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RBAM_RS00230 (RBAM_000460) abrB 45611..45901 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  RBAM_RS00235 (RBAM_000470) metG 46385..48376 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  RBAM_RS00240 (RBAM_000480) - 48452..49219 (+) 768 WP_041482169.1 TatD family hydrolase -
  RBAM_RS00245 (RBAM_000490) - 49354..50679 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=28833 RBAM_RS00230 WP_169510469.1 45611..45901(-) (abrB) [Bacillus velezensis FZB42]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=28833 RBAM_RS00230 WP_169510469.1 45611..45901(-) (abrB) [Bacillus velezensis FZB42]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment