Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EHC70_RS00555 | Genome accession | NZ_CP034285 |
| Coordinates | 104812..106059 (+) | Length | 415 a.a. |
| NCBI ID | WP_042780790.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 20140624012-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 99812..111059
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC70_RS00510 (EHC70_00525) | - | 100112..100441 (-) | 330 | WP_015297474.1 | DUF2500 domain-containing protein | - |
| EHC70_RS00515 (EHC70_00530) | - | 100683..101051 (+) | 369 | WP_005489749.1 | hypothetical protein | - |
| EHC70_RS00530 (EHC70_00545) | - | 102028..102648 (+) | 621 | WP_005481960.1 | lysoplasmalogenase | - |
| EHC70_RS00535 (EHC70_00550) | - | 102718..102939 (+) | 222 | WP_015297472.1 | YecH family metal-binding protein | - |
| EHC70_RS00540 (EHC70_00555) | - | 103059..103643 (+) | 585 | WP_140103824.1 | YhgN family NAAT transporter | - |
| EHC70_RS00545 (EHC70_00560) | - | 103697..103963 (-) | 267 | WP_005496405.1 | DUF1145 domain-containing protein | - |
| EHC70_RS00550 (EHC70_00565) | rsmD | 103989..104588 (-) | 600 | WP_140103825.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| EHC70_RS00555 (EHC70_00570) | pilA | 104812..106059 (+) | 1248 | WP_042780790.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| EHC70_RS00560 (EHC70_00575) | ftsE | 106082..106756 (+) | 675 | WP_005481953.1 | cell division ATP-binding protein FtsE | - |
| EHC70_RS00565 (EHC70_00580) | ftsX | 106746..107714 (+) | 969 | WP_005481956.1 | permease-like cell division protein FtsX | - |
| EHC70_RS00570 (EHC70_00585) | rpoH | 107890..108750 (+) | 861 | WP_005490420.1 | RNA polymerase sigma factor RpoH | - |
| EHC70_RS00575 (EHC70_00595) | glpE | 109242..109562 (+) | 321 | WP_005460380.1 | thiosulfate sulfurtransferase GlpE | - |
| EHC70_RS00580 (EHC70_00600) | glpG | 109562..110404 (+) | 843 | WP_025547935.1 | rhomboid family intramembrane serine protease GlpG | - |
| EHC70_RS00585 (EHC70_00605) | - | 110464..110874 (-) | 411 | WP_005460376.1 | flagellar basal body-associated protein FliL | - |
Sequence
Protein
Download Length: 415 a.a. Molecular weight: 45155.72 Da Isoelectric Point: 4.2175
>NTDB_id=288296 EHC70_RS00555 WP_042780790.1 104812..106059(+) (pilA) [Vibrio parahaemolyticus strain 20140624012-1]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEAEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMD
TTTKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGK
KVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVR
VMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRP
FETQEFIDALFSREE
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEAEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMD
TTTKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGK
KVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVR
VMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRP
FETQEFIDALFSREE
Nucleotide
Download Length: 1248 bp
>NTDB_id=288296 EHC70_RS00555 WP_042780790.1 104812..106059(+) (pilA) [Vibrio parahaemolyticus strain 20140624012-1]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCTCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAA
GCCGACAGAAAGCTTCTTCGCTCGCCTTAAACGCAGCCTTAGCCGTACGAAAGCGAACATCGGTGCTGGTTTCTTTGGTC
TGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGAC
ACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCTCGTGGTGATCTGAAAGATGGCGAAGCTCTTTATGGTCT
GCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCA
TCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAG
AAAGTAATGTTAGCGGCAGGCGATACTTTCCGAGCGGCCGCGGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGT
TCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCG
TCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGT
GTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATGCTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAG
CCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCG
TTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCT
TTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCTCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAA
GCCGACAGAAAGCTTCTTCGCTCGCCTTAAACGCAGCCTTAGCCGTACGAAAGCGAACATCGGTGCTGGTTTCTTTGGTC
TGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGAC
ACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCTCGTGGTGATCTGAAAGATGGCGAAGCTCTTTATGGTCT
GCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCA
TCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAG
AAAGTAATGTTAGCGGCAGGCGATACTTTCCGAGCGGCCGCGGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGT
TCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCG
TCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGT
GTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATGCTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAG
CCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCG
TTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCT
TTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
48.429 |
92.048 |
0.446 |