Detailed information NTG0288255

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: A1552VC_RS12325
• Genome accession: NZ_CP028894
• Coordinates: 2620155..2621162 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain A1552
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2615155..2626162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A1552VC_RS12300 (A1552VC_02427)	rraA	2615730..2616245 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
A1552VC_RS12305 (A1552VC_02428)	-	2616320..2617237 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
A1552VC_RS12310 (A1552VC_02429)	hslU	2617341..2618672 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
A1552VC_RS12315 (A1552VC_02430)	hslV	2618738..2619295 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
A1552VC_RS12320 (A1552VC_02431)	-	2619432..2619983 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
A1552VC_RS12325 (A1552VC_02432)	cytR	2620155..2621162 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
A1552VC_RS12330 (A1552VC_02433)	priA	2621468..2623672 (-)	2205	WP_001247858.1	primosomal protein N'	-
A1552VC_RS12335 (A1552VC_02434)	rpmE	2623927..2624145 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
A1552VC_RS12340 (A1552VC_02435)	-	2624453..2625730 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
A1552VC_RS12345 (A1552VC_02436)	metJ	2625841..2626158 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=288255 A1552VC_RS12325 WP_000224452.1 2620155..2621162(-) (cytR) [Vibrio cholerae strain A1552]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=288255 A1552VC_RS12325 WP_000224452.1 2620155..2621162(-) (cytR) [Vibrio cholerae strain A1552]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904