Detailed information NTG0288229

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Sa5Y_RS11745
• Genome accession: NZ_CP028892
• Coordinates: 2522980..2523987 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain Sa5Y
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2517980..2528987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Sa5Y_RS11735 (Sa5Y_VC02305)	cysM	2519143..2520030 (+)	888	WP_001279362.1	cysteine synthase CysM	-
Sa5Y_RS11740 (Sa5Y_VC02306)	mutS	2520298..2522886 (+)	2589	WP_095487753.1	DNA mismatch repair protein MutS	-
Sa5Y_RS11745 (Sa5Y_VC02307)	rpoS	2522980..2523987 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
Sa5Y_RS11750 (Sa5Y_VC02308)	nlpD	2524061..2524996 (-)	936	WP_000171040.1	murein hydrolase activator NlpD	-
Sa5Y_RS11755 (Sa5Y_VC02309)	-	2524996..2525622 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Sa5Y_RS11760 (Sa5Y_VC02310)	surE	2525615..2526367 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
Sa5Y_RS11765 (Sa5Y_VC02311)	truD	2526369..2527454 (-)	1086	WP_085603391.1	tRNA pseudouridine(13) synthase TruD	-
Sa5Y_RS11770 (Sa5Y_VC02312)	ispF	2527484..2527960 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Sa5Y_RS11775 (Sa5Y_VC02313)	ispD	2527957..2528655 (-)	699	WP_095487745.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Sa5Y_RS11780 (Sa5Y_VC02314)	ftsB	2528652..2528936 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=288229 Sa5Y_RS11745 WP_000116735.1 2522980..2523987(-) (rpoS) [Vibrio cholerae strain Sa5Y]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=288229 Sa5Y_RS11745 WP_000116735.1 2522980..2523987(-) (rpoS) [Vibrio cholerae strain Sa5Y]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTAGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997