Detailed information NTG0288042

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EAL91_RS06355
• Genome accession: NZ_CP034147
• Coordinates: 1293316..1294551 (+)
• Length: 411 a.a.
• NCBI ID: WP_033756314.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP14039
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1288316..1299551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAL91_RS06340	-	1288728..1290662 (+)	1935	WP_033756459.1	type IA DNA topoisomerase	-
EAL91_RS06345	-	1290792..1291778 (+)	987	WP_033756316.1	VirB8/TrbF family protein	-
EAL91_RS06350	-	1291778..1293319 (+)	1542	WP_033758579.1	TrbG/VirB9 family P-type conjugative transfer protein	-
EAL91_RS06355	comB10	1293316..1294551 (+)	1236	WP_033756314.1	DNA type IV secretion system protein ComB10	Machinery gene
EAL91_RS06360	-	1294621..1294917 (+)	297	WP_000773935.1	hypothetical protein	-
EAL91_RS06365	-	1294907..1295170 (+)	264	WP_033756313.1	hypothetical protein	-
EAL91_RS06370	-	1295167..1295466 (+)	300	WP_000660142.1	hypothetical protein	-
EAL91_RS06375	-	1295466..1296407 (+)	942	WP_033756312.1	ATPase, T2SS/T4P/T4SS family	-
EAL91_RS06380	-	1296404..1296859 (+)	456	WP_033756311.1	hypothetical protein	-
EAL91_RS06385	-	1296856..1297146 (+)	291	WP_033756309.1	hypothetical protein	-
EAL91_RS06390	-	1297147..1297704 (+)	558	WP_033756307.1	hypothetical protein	-
EAL91_RS06395	-	1297705..1299450 (+)	1746	WP_033756306.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46485.58 Da
• Isoelectric Point: 10.0580

>NTDB_id=288042 EAL91_RS06355 WP_033756314.1 1293316..1294551(+) (comB10) [Helicobacter pylori strain HP14039]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDAINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKNFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVFNTKSK
EKQELEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=288042 EAL91_RS06355 WP_033756314.1 1293316..1294551(+) (comB10) [Helicobacter pylori strain HP14039]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATGCTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGAATTTTAA
TAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTGGTGATTT
TAGCTTCTCGTATTAGTAGCCAAAAAGAAACGCAGCCTCCCACCTCTATAAAAAATAGTGTTTTTAACACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATATAGCGAGCAGTGAAAA
CAAACTTTTAAGAACCATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATCATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGTTATAACGGCATGATAGGCACACTCCATAATAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATTAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCCTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	55.517	70.56	0.392