Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EAL91_RS05605 Genome accession   NZ_CP034147
Coordinates   1126269..1127789 (+) Length   506 a.a.
NCBI ID   WP_121053536.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1121269..1132789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS05575 moaC 1121416..1121892 (+) 477 WP_078268494.1 cyclic pyranopterin monophosphate synthase MoaC -
  EAL91_RS05580 hpaA 1122011..1122793 (+) 783 WP_121053528.1 flagellar sheath lipoprotein HpaA -
  EAL91_RS05585 - 1122823..1123659 (+) 837 WP_121053530.1 outer membrane protein -
  EAL91_RS05590 tig 1123771..1125126 (+) 1356 WP_121053532.1 trigger factor -
  EAL91_RS05595 clpP 1125147..1125734 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  EAL91_RS05600 def 1125739..1126263 (+) 525 WP_121053534.1 peptide deformylase -
  EAL91_RS05605 comM 1126269..1127789 (+) 1521 WP_121053536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EAL91_RS05610 - 1127814..1129874 (+) 2061 WP_121053538.1 heavy metal translocating P-type ATPase -
  EAL91_RS05615 - 1129918..1131237 (+) 1320 WP_121053540.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57304.34 Da        Isoelectric Point: 8.2303

>NTDB_id=288037 EAL91_RS05605 WP_121053536.1 1126269..1127789(+) (comM) [Helicobacter pylori strain HP14039]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIVPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=288037 EAL91_RS05605 WP_121053536.1 1126269..1127789(+) (comM) [Helicobacter pylori strain HP14039]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAACCCTAATATTTTCCCCATGCTTTTAGACATTGCCATCAAACGCCCCCATGCCAAAA
TCATTGTGCCTAAGGCGAATGAGGAGCTTTTTTCGCTTATCCCTAATTTACAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACACCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGAAGCTTTAGAAATCCTCATCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCAAGAGTGCACAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGTTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAA
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTTAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTTGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment