Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EAL91_RS03755 Genome accession   NZ_CP034147
Coordinates   741197..742246 (-) Length   349 a.a.
NCBI ID   WP_121054334.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 736197..747246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS03730 rpsL 737261..737668 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  EAL91_RS03735 rpsG 737684..738151 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  EAL91_RS03740 fusA 738163..740241 (+) 2079 WP_015429323.1 elongation factor G -
  EAL91_RS03750 - 740788..741006 (+) 219 WP_000744170.1 hypothetical protein -
  EAL91_RS03755 waaF 741197..742246 (-) 1050 WP_121054334.1 lipopolysaccharide heptosyltransferase II Regulator
  EAL91_RS03760 hisS 742308..743636 (+) 1329 WP_121054335.1 histidine--tRNA ligase -
  EAL91_RS03765 asd 743623..744663 (+) 1041 WP_121054336.1 aspartate-semialdehyde dehydrogenase -
  EAL91_RS03770 - 745094..746062 (+) 969 WP_121054337.1 DUF874 family protein -
  EAL91_RS03775 - 746295..747038 (-) 744 WP_121054338.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39513.17 Da        Isoelectric Point: 9.4629

>NTDB_id=288030 EAL91_RS03755 WP_121054334.1 741197..742246(-) (waaF) [Helicobacter pylori strain HP14039]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVTAAPKEYHQVEKYCFLFSQFLEKELDQKSVLSL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLQAAHTLLKEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=288030 EAL91_RS03755 WP_121054334.1 741197..742246(-) (waaF) [Helicobacter pylori strain HP14039]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTACTAGCTACTTACAAACTC
GCCCAAAAAATAGGGCGTTGCGATATAGCAATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGGTAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTATCCTTA
AAATTAGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCTTTATTATCCCAC
AACGCTTACAATCTGTGTGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAAA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.081

98.567

0.375

Multiple sequence alignment