Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   AB57_RS03130 Genome accession   NC_011586
Coordinates   642390..643190 (+) Length   266 a.a.
NCBI ID   WP_005136899.1    Uniprot ID   A0A0D5YL78
Organism   Acinetobacter baumannii AB0057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 637390..648190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB57_RS03105 (AB57_0597) - 638300..639598 (+) 1299 WP_001991191.1 glycosyltransferase family 4 protein -
  AB57_RS03110 (AB57_0598) - 639623..640174 (+) 552 WP_000669565.1 phosphatase PAP2 family protein -
  AB57_RS03115 (AB57_0599) iscX 640274..640474 (+) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  AB57_RS03120 (AB57_0600) ndk 640588..641019 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  AB57_RS03125 (AB57_0601) rlmN 641142..642374 (+) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AB57_RS03130 (AB57_0602) pilF 642390..643190 (+) 801 WP_005136899.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  AB57_RS03135 (AB57_0603) - 643181..643972 (+) 792 WP_000405163.1 helix-turn-helix domain-containing protein -
  AB57_RS03140 (AB57_0604) ispG 643994..645109 (+) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  AB57_RS03145 (AB57_0605) hisS 645106..646398 (+) 1293 WP_000095259.1 histidine--tRNA ligase -
  AB57_RS03150 (AB57_0606) - 646427..647125 (+) 699 WP_000058788.1 YfgM family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30083.42 Da        Isoelectric Point: 9.3928

>NTDB_id=28798 AB57_RS03130 WP_005136899.1 642390..643190(+) (pilF) [Acinetobacter baumannii AB0057]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKSNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGNI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=28798 AB57_RS03130 WP_005136899.1 642390..643190(+) (pilF) [Acinetobacter baumannii AB0057]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGCCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAATCCAATTTAGAAAAAGCAGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCAATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_16)

(88-134)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YL78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.248

100

0.992
  pilF Acinetobacter baylyi ADP1

73.846

97.744

0.722

Multiple sequence alignment