Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   EIA51_RS00370 Genome accession   NZ_CP034110
Coordinates   78008..79852 (+) Length   614 a.a.
NCBI ID   WP_110479589.1    Uniprot ID   A0AAE5TH12
Organism   Avibacterium paragallinarum strain FARPER-174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 73008..84852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIA51_RS00350 (EIA51_00350) - 74271..75493 (+) 1223 WP_124994771.1 IS3 family transposase -
  EIA51_RS00355 (EIA51_00355) - 75542..75955 (-) 414 WP_124994772.1 hypothetical protein -
  EIA51_RS00360 (EIA51_00360) lysA 76110..77360 (-) 1251 WP_124994773.1 diaminopimelate decarboxylase -
  EIA51_RS11955 lptM 77371..77490 (-) 120 WP_391484921.1 LPS translocon maturation chaperone LptM -
  EIA51_RS00365 (EIA51_00365) cyaY 77638..77946 (+) 309 WP_103855636.1 iron donor protein CyaY -
  EIA51_RS00370 (EIA51_00370) recQ 78008..79852 (+) 1845 WP_110479589.1 DNA helicase RecQ Machinery gene
  EIA51_RS00375 (EIA51_00375) - 80195..80422 (+) 228 WP_103854296.1 hypothetical protein -
  EIA51_RS00380 (EIA51_00380) - 80658..80879 (+) 222 WP_103854297.1 hypothetical protein -
  EIA51_RS00385 (EIA51_00385) - 81666..82919 (+) 1254 WP_110479587.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 69726.02 Da        Isoelectric Point: 8.5034

>NTDB_id=287956 EIA51_RS00370 WP_110479589.1 78008..79852(+) (recQ) [Avibacterium paragallinarum strain FARPER-174]
MEKNTALKVLNEVFGYQSFRNGQEEVINAALSHQDSLVIMATGNGKSLCYQIPALCFPGLTLVISPLISLMKDQVDQLLA
NGIEVDYLNSTQTFEQQQIVQNKAISGQLKLLYISPEKAMTTSFFQFISHCQVSFIAIDEAHCISQWGHDFRPEYTQLGG
LKRCFPNAPIMALTATADSATRQDILHHLQLDNPHIYIGSFDRPNIRYTLVEKFKPMEQLCQFVLGQKGKSGIVYCNSRN
KVERLAESLRKKGVAAQAYHAGMEASQREQVQRAFQRDNVQVVVATVAFGMGINKSNVRFVAHFDLPRSIEAYYQETGRA
GRDDLPAEAVLFYEPADYAWLQKMLLEKPESPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQAPCKNCDICLDPP
KKYDGLIDAQKVMSTIYRVGQMFGVHYVIGVLRGMQNQKIKDNQHDQLSVYGIGKDKSKEYWQSVIRQLIHLGLVQQVMN
QFHSVLQLTENARPILRGEQPLELAMPRVSSIMTAQSAQKSAVQNYDKDLFARLRFLRKQIADKENIPPYIVFNDATLQE
MAQYQPTSKREMLQINGVGATKLERFGQAFLHIIQEHKSLSAKNSQPLKLSNEK

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=287956 EIA51_RS00370 WP_110479589.1 78008..79852(+) (recQ) [Avibacterium paragallinarum strain FARPER-174]
ATGGAAAAAAACACCGCACTTAAGGTTCTGAACGAGGTTTTTGGTTACCAATCTTTCCGCAACGGACAAGAAGAAGTGAT
CAACGCCGCCCTTTCACACCAAGATAGCCTTGTGATTATGGCAACGGGAAACGGAAAATCCCTTTGCTATCAAATTCCTG
CGCTTTGCTTTCCGGGGCTAACCTTAGTGATTTCTCCGCTGATTTCCTTAATGAAAGATCAAGTGGATCAACTGCTTGCC
AACGGAATTGAAGTGGATTATCTCAATTCCACACAAACCTTTGAGCAGCAGCAAATTGTACAAAATAAGGCGATTTCAGG
GCAGCTCAAATTGCTTTATATTTCGCCCGAAAAGGCGATGACAACCAGTTTTTTCCAATTTATTTCTCATTGCCAAGTGA
GTTTTATTGCCATTGATGAAGCCCATTGTATTTCCCAATGGGGACACGATTTCCGCCCTGAATACACCCAACTTGGCGGC
TTAAAACGTTGCTTTCCCAACGCACCGATAATGGCGCTCACTGCCACCGCAGACAGTGCCACAAGGCAAGATATTTTGCA
CCATTTGCAACTGGATAATCCGCATATTTATATCGGCAGTTTTGATCGCCCAAATATTCGCTATACCTTGGTGGAGAAAT
TTAAGCCAATGGAGCAGCTATGCCAATTTGTGCTAGGGCAGAAGGGCAAAAGTGGTATCGTTTATTGCAACAGCCGCAAC
AAAGTGGAGCGCTTGGCGGAAAGTTTGCGCAAAAAAGGCGTGGCAGCACAAGCCTATCACGCAGGAATGGAAGCGAGCCA
GCGCGAGCAAGTGCAGCGTGCCTTTCAGCGCGATAATGTGCAAGTGGTGGTGGCTACCGTTGCCTTTGGAATGGGCATTA
ACAAATCTAACGTGCGATTTGTGGCGCATTTTGATTTGCCGCGCAGTATCGAGGCGTATTACCAAGAAACAGGGCGCGCA
GGGCGTGATGACTTACCTGCCGAAGCGGTGCTGTTTTACGAGCCTGCCGATTATGCGTGGTTACAAAAAATGCTGCTGGA
AAAACCAGAAAGCCCGCAGCGCCAAATTGAACAGCATAAATTAGAAGCCATTGGTGAATTTGCCGAAAGCCAAACCTGCC
GCCGTTTAGTCTTGCTGAATTATTTTGGCGAACATCGCCAAGCACCGTGCAAAAACTGCGATATTTGCCTTGATCCGCCG
AAAAAATATGACGGCTTAATTGACGCACAGAAAGTGATGTCCACCATTTATCGTGTGGGACAAATGTTCGGCGTGCATTA
TGTGATCGGCGTGCTGCGCGGAATGCAAAATCAAAAAATTAAAGATAACCAGCACGATCAGCTCAGCGTGTACGGCATTG
GCAAAGACAAAAGCAAAGAATATTGGCAATCGGTGATCCGCCAACTGATTCATCTTGGGCTTGTGCAACAAGTGATGAAT
CAATTTCATTCGGTGTTACAACTGACGGAAAACGCGCGCCCAATTTTGCGTGGTGAACAGCCCTTAGAGCTGGCAATGCC
AAGGGTTTCTTCCATTATGACCGCACAAAGCGCACAAAAAAGTGCGGTGCAAAATTATGACAAAGATCTCTTTGCTCGCC
TGCGTTTCTTACGCAAACAAATTGCCGACAAGGAAAATATCCCCCCTTATATTGTGTTCAACGATGCTACCTTGCAAGAA
ATGGCACAATATCAACCCACCAGCAAGCGCGAAATGCTACAAATCAACGGCGTGGGCGCAACCAAATTAGAGCGCTTCGG
ACAGGCATTCCTGCATATTATCCAAGAGCATAAATCGCTCAGCGCAAAAAACAGCCAACCGCTGAAATTATCTAATGAAA
AATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(218-322)

DEAD/DEAH box helicase (DEAD)

(22-179)

RecQ zinc-binding (RecQ_Zn_bind)

(336-397)

HRDC domain (HRDC)

(528-594)

RQC domain (RQC)

(399-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5TH12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.399

97.557

0.384