Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGA47_RS21605 Genome accession   NZ_CP034106
Coordinates   4477820..4478293 (-) Length   157 a.a.
NCBI ID   WP_032161353.1    Uniprot ID   -
Organism   Escherichia coli strain RCAD0514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4472820..4483293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGA47_RS21565 (EGA47_21810) - 4473092..4473742 (-) 651 WP_001037977.1 HNH endonuclease -
  EGA47_RS21570 (EGA47_21815) - 4473879..4474022 (+) 144 Protein_4256 restriction endonuclease -
  EGA47_RS21575 (EGA47_21830) - 4474656..4475444 (-) 789 WP_032161357.1 helix-turn-helix domain-containing protein -
  EGA47_RS21580 (EGA47_21835) - 4475561..4475836 (-) 276 WP_001683517.1 type II toxin-antitoxin system RelE/ParE family toxin -
  EGA47_RS21585 (EGA47_21840) - 4475840..4476088 (-) 249 WP_024187601.1 ribbon-helix-helix domain-containing protein -
  EGA47_RS21590 (EGA47_21845) - 4476165..4476998 (-) 834 WP_032250394.1 DUF4942 domain-containing protein -
  EGA47_RS21595 (EGA47_21850) - 4477113..4477454 (-) 342 WP_032161355.1 TA system toxin CbtA family protein -
  EGA47_RS21600 (EGA47_21855) - 4477485..4477820 (-) 336 WP_032161354.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EGA47_RS21605 (EGA47_21860) radC 4477820..4478293 (-) 474 WP_032161353.1 DNA repair protein RadC Machinery gene
  EGA47_RS21610 (EGA47_21865) - 4478323..4479141 (-) 819 WP_001683514.1 DUF932 domain-containing protein -
  EGA47_RS21615 (EGA47_21870) - 4479377..4479856 (-) 480 WP_239594486.1 hypothetical protein -
  EGA47_RS21625 (EGA47_21880) - 4480649..4481101 (+) 453 WP_152925145.1 hypothetical protein -
  EGA47_RS24665 - 4481143..4481343 (-) 201 WP_313859818.1 hypothetical protein -
  EGA47_RS21630 (EGA47_21885) - 4481325..4482305 (-) 981 WP_000019450.1 IS5-like element ISKpn26 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17904.66 Da        Isoelectric Point: 8.6704

>NTDB_id=287952 EGA47_RS21605 WP_032161353.1 4477820..4478293(-) (radC) [Escherichia coli strain RCAD0514]
MSELILTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAVILAHNHPSGVAEPSRADRLITTNIVKTLDLVKVRVLDHFIIGAGDVLSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=287952 EGA47_RS21605 WP_032161353.1 4477820..4478293(-) (radC) [Escherichia coli strain RCAD0514]
ATGTCTGAACTGATACTAACACCGGTATTTTCGGTGAGTGAACAACGCGTTATCCGCCGTGCGATGCGTCTGCTGGAGAA
ATATCAACGCAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTCTATCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGCACGGAAGTACATCCCCGTGAGATTGTGAAATCAGCGCTACGGCACAATGCCGCAGCAGTGATCCTTGCGCATAA
CCATCCCTCCGGCGTGGCGGAACCCAGTCGGGCCGACAGACTCATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
AAGTGAGGGTGCTGGATCATTTCATTATTGGGGCGGGGGATGTCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.085

75.159

0.414