Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGA47_RS19940 Genome accession   NZ_CP034106
Coordinates   4131958..4132437 (+) Length   159 a.a.
NCBI ID   WP_000437750.1    Uniprot ID   -
Organism   Escherichia coli strain RCAD0514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4126958..4137437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGA47_RS19900 (EGA47_20135) - 4127272..4127907 (+) 636 WP_000772020.1 hypothetical protein -
  EGA47_RS19905 (EGA47_20140) - 4127943..4128395 (+) 453 WP_001020418.1 YfjS/YafY family lipoprotein -
  EGA47_RS19910 (EGA47_20145) - 4128392..4128844 (+) 453 WP_000734138.1 hypothetical protein -
  EGA47_RS19915 (EGA47_20150) - 4128907..4129449 (+) 543 WP_001104018.1 DUF4339 domain-containing protein -
  EGA47_RS19920 (EGA47_20155) - 4129509..4129961 (+) 453 WP_001061894.1 IrmA family protein -
  EGA47_RS19925 (EGA47_20160) - 4130038..4130271 (+) 234 WP_001114682.1 DUF905 domain-containing protein -
  EGA47_RS19930 (EGA47_20165) - 4130391..4131209 (+) 819 WP_124846291.1 DUF932 domain-containing protein -
  EGA47_RS19935 (EGA47_20175) - 4131477..4131946 (+) 470 Protein_3935 antirestriction protein -
  EGA47_RS19940 (EGA47_20180) radC 4131958..4132437 (+) 480 WP_000437750.1 DNA repair protein RadC Machinery gene
  EGA47_RS19945 (EGA47_20185) - 4132458..4132679 (+) 222 WP_000691981.1 DUF987 domain-containing protein -
  EGA47_RS19950 (EGA47_20190) - 4132703..4133062 (+) 360 WP_000066236.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EGA47_RS19955 (EGA47_20195) - 4133113..4133490 (+) 378 WP_001194695.1 TA system toxin CbtA family protein -
  EGA47_RS19960 (EGA47_20200) - 4133487..4133978 (+) 492 WP_000777682.1 DUF5983 family protein -
  EGA47_RS19965 (EGA47_20205) - 4134010..4134213 (+) 204 WP_000413747.1 DUF957 domain-containing protein -
  EGA47_RS19970 (EGA47_20210) - 4134294..4135138 (+) 845 Protein_3942 DUF4942 domain-containing protein -
  EGA47_RS19980 (EGA47_20220) dnaQ 4135480..4136211 (-) 732 WP_001340895.1 DNA polymerase III subunit epsilon -
  EGA47_RS19985 (EGA47_20225) rnhA 4136276..4136743 (+) 468 WP_000917883.1 ribonuclease HI -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17833.29 Da        Isoelectric Point: 6.5823

>NTDB_id=287947 EGA47_RS19940 WP_000437750.1 4131958..4132437(+) (radC) [Escherichia coli strain RCAD0514]
MEQQLPLFARELAPADQQTVRKALSLLECQLRETGASFTSSHAVRDWLRLQLASLEREEFTALFLDNQHRLIAHETLFTG
TINHTQVHPREVVKAGLKHNCAAVIVAHSHPSGEAEPSKADRQVTTRIQQALDLVDIRLLDHLVVGGMEITSFADRGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=287947 EGA47_RS19940 WP_000437750.1 4131958..4132437(+) (radC) [Escherichia coli strain RCAD0514]
ATGGAGCAACAGTTACCGTTGTTTGCCCGTGAATTAGCCCCTGCCGACCAGCAGACAGTCAGGAAAGCCTTATCTCTGCT
GGAGTGCCAGCTACGTGAAACCGGCGCGTCATTTACTTCCAGCCATGCCGTCCGCGACTGGCTGCGCCTGCAGCTCGCGT
CACTGGAGCGGGAAGAGTTTACCGCGCTCTTTCTCGATAACCAGCATCGCCTGATAGCCCACGAAACGCTATTTACCGGC
ACCATCAACCATACGCAGGTCCATCCCCGCGAAGTGGTGAAGGCCGGTCTGAAGCATAACTGCGCCGCTGTCATTGTCGC
CCATAGCCATCCCTCCGGGGAGGCTGAACCCAGCAAGGCAGACCGTCAGGTCACTACGCGTATTCAGCAGGCGCTGGACC
TGGTTGATATCCGCTTGCTGGACCACCTGGTGGTCGGCGGCATGGAGATCACCTCGTTTGCAGATCGTGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.724

72.956

0.377