Detailed information NTG0287926

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N16961_RS11720
• Genome accession: NZ_CP028827
• Coordinates: 2519747..2520754 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain N16961
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2514747..2525754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N16961_RS11710 (N16961_VC02296)	cysM	2515911..2516798 (+)	888	WP_001279365.1	cysteine synthase CysM	-
N16961_RS11715 (N16961_VC02297)	mutS	2517066..2519654 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
N16961_RS11720 (N16961_VC02298)	rpoS	2519747..2520754 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
N16961_RS11725 (N16961_VC02299)	nlpD	2520828..2521763 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
N16961_RS11730 (N16961_VC02300)	-	2521763..2522389 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N16961_RS11735 (N16961_VC02301)	surE	2522382..2523134 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
N16961_RS11740 (N16961_VC02302)	truD	2523136..2524221 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
N16961_RS11745 (N16961_VC02303)	ispF	2524251..2524727 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N16961_RS11750 (N16961_VC02304)	ispD	2524724..2525422 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N16961_RS11755 (N16961_VC02305)	ftsB	2525419..2525703 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=287926 N16961_RS11720 WP_000116737.1 2519747..2520754(-) (rpoS) [Vibrio cholerae strain N16961]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=287926 N16961_RS11720 WP_000116737.1 2519747..2520754(-) (rpoS) [Vibrio cholerae strain N16961]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1