Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EGA47_RS10580 Genome accession   NZ_CP034106
Coordinates   2241570..2242997 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain RCAD0514     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2236570..2247997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGA47_RS10550 (EGA47_10635) yeeZ 2236626..2237450 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  EGA47_RS10555 (EGA47_10640) yeeY 2237496..2238424 (+) 929 Protein_2068 LysR substrate-binding domain-containing protein -
  EGA47_RS10560 (EGA47_10645) yoeI 2238639..2238701 (+) 63 WP_010723108.1 membrane protein YoeI -
  EGA47_RS10565 (EGA47_10650) plaP 2238691..2240049 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EGA47_RS10570 (EGA47_10655) tsuA 2240228..2241286 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  EGA47_RS10575 (EGA47_10660) tsuB 2241300..2241527 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EGA47_RS10580 (EGA47_10665) sbcB 2241570..2242997 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  EGA47_RS10585 (EGA47_10670) dacD 2243206..2244372 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EGA47_RS10590 (EGA47_10675) sbmC 2244491..2244964 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  EGA47_RS10595 (EGA47_10680) yeeA 2245162..2246220 (+) 1059 WP_001200905.1 FUSC family protein -
  EGA47_RS10600 (EGA47_10685) tmaR 2246392..2246721 (+) 330 WP_000450409.1 DUF496 family protein -
  EGA47_RS10605 (EGA47_10690) - 2246822..2247004 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EGA47_RS10610 (EGA47_10695) - 2247058..2247204 (+) 147 Protein_2079 transposase domain-containing protein -
  EGA47_RS10615 (EGA47_10700) - 2247493..2247573 (-) 81 Protein_2080 hypothetical protein -
  EGA47_RS10620 (EGA47_10705) yeeW 2247619..2247813 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=287922 EGA47_RS10580 WP_000980570.1 2241570..2242997(-) (sbcB) [Escherichia coli strain RCAD0514]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=287922 EGA47_RS10580 WP_000980570.1 2241570..2242997(-) (sbcB) [Escherichia coli strain RCAD0514]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment