Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGA47_RS07240 Genome accession   NZ_CP034106
Coordinates   1520202..1520678 (-) Length   158 a.a.
NCBI ID   WP_001186740.1    Uniprot ID   -
Organism   Escherichia coli strain RCAD0514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515202..1525678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGA47_RS07210 (EGA47_07280) - 1517361..1518206 (-) 846 WP_001280435.1 DUF4942 domain-containing protein -
  EGA47_RS07215 (EGA47_07285) - 1518303..1518500 (-) 198 WP_000839263.1 DUF957 domain-containing protein -
  EGA47_RS07220 (EGA47_07290) - 1518512..1519000 (-) 489 WP_001177592.1 DUF5983 family protein -
  EGA47_RS07225 (EGA47_07295) cbtA 1518991..1519374 (-) 384 WP_000854822.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EGA47_RS07230 (EGA47_07300) - 1519464..1519832 (-) 369 WP_071587515.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EGA47_RS07235 (EGA47_07305) - 1519912..1520133 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  EGA47_RS07240 (EGA47_07310) radC 1520202..1520678 (-) 477 WP_001186740.1 RadC family protein Machinery gene
  EGA47_RS07245 (EGA47_07315) - 1520694..1521179 (-) 486 WP_063097556.1 antirestriction protein -
  EGA47_RS07250 (EGA47_07320) - 1521270..1522088 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  EGA47_RS07255 (EGA47_07330) - 1522415..1525261 (-) 2847 WP_205962664.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17741.31 Da        Isoelectric Point: 6.7742

>NTDB_id=287912 EGA47_RS07240 WP_001186740.1 1520202..1520678(-) (radC) [Escherichia coli strain RCAD0514]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIADETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=287912 EGA47_RS07240 WP_001186740.1 1520202..1520678(-) (radC) [Escherichia coli strain RCAD0514]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCTGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGATGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment