Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | N16961_RS04920 | Genome accession | NZ_CP028827 |
| Coordinates | 1015639..1015950 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain N16961 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1010639..1020950
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N16961_RS04905 (N16961_VC00958) | lon | 1010676..1013036 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| N16961_RS04910 (N16961_VC00959) | - | 1013220..1013492 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| N16961_RS04915 (N16961_VC00961) | ppiD | 1013645..1015504 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| N16961_RS04920 (N16961_VC00962) | comEA | 1015639..1015950 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| N16961_RS04925 (N16961_VC00963) | cmk | 1016133..1016810 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| N16961_RS04930 (N16961_VC00964) | rpsA | 1016919..1018589 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| N16961_RS04935 (N16961_VC00965) | ihfB | 1018877..1019155 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| N16961_RS04940 (N16961_VC00966) | - | 1019294..1019575 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| N16961_RS04945 (N16961_VC00967) | lapB | 1019587..1020756 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=287912 N16961_RS04920 WP_001166105.1 1015639..1015950(+) (comEA) [Vibrio cholerae strain N16961]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=287912 N16961_RS04920 WP_001166105.1 1015639..1015950(+) (comEA) [Vibrio cholerae strain N16961]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |