Detailed information NTG0287908

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGA47_RS06790
• Genome accession: NZ_CP034106
• Coordinates: 1435507..1436499 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RCAD0514
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1430507..1441499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGA47_RS06760 (EGA47_06820)	ispD	1430568..1431278 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EGA47_RS06765 (EGA47_06825)	ispF	1431278..1431757 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGA47_RS06770 (EGA47_06830)	truD	1431754..1432803 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EGA47_RS06775 (EGA47_06835)	surE	1432784..1433545 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EGA47_RS06780 (EGA47_06840)	pcm	1433539..1434165 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EGA47_RS06785 (EGA47_06845)	nlpD	1434350..1435444 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EGA47_RS06790 (EGA47_06850)	rpoS	1435507..1436499 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EGA47_RS06795 (EGA47_06855)	ygbN	1436593..1437957 (-)	1365	WP_049254918.1	GntP family transporter	-
EGA47_RS06800 (EGA47_06860)	ygbM	1438046..1438822 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
EGA47_RS06805 (EGA47_06865)	ygbL	1438827..1439465 (-)	639	WP_001278994.1	aldolase	-
EGA47_RS06810 (EGA47_06870)	otnK	1439462..1440724 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=287908 EGA47_RS06790 WP_000081550.1 1435507..1436499(+) (rpoS) [Escherichia coli strain RCAD0514]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=287908 EGA47_RS06790 WP_000081550.1 1435507..1436499(+) (rpoS) [Escherichia coli strain RCAD0514]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCAGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715