Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HYN48_RS04820 Genome accession   NZ_CP028811
Coordinates   1173163..1174521 (-) Length   452 a.a.
NCBI ID   WP_108370047.1    Uniprot ID   A0A2S0RCI1
Organism   Flavobacterium magnum strain HYN0048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168163..1179521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN48_RS04805 (HYN48_04805) - 1168605..1170440 (+) 1836 WP_181248531.1 histidine kinase -
  HYN48_RS04810 (HYN48_04810) - 1170437..1171186 (+) 750 WP_245945987.1 LytTR family DNA-binding domain-containing protein -
  HYN48_RS04815 (HYN48_04815) - 1171183..1173147 (-) 1965 WP_108370046.1 biosynthetic peptidoglycan transglycosylase -
  HYN48_RS04820 (HYN48_04820) radA 1173163..1174521 (-) 1359 WP_108370047.1 DNA repair protein RadA Machinery gene
  HYN48_RS04825 (HYN48_04825) - 1174521..1175669 (-) 1149 WP_108370048.1 alpha/beta hydrolase-fold protein -
  HYN48_RS04830 (HYN48_04830) - 1175727..1176689 (-) 963 WP_108370049.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HYN48_RS04835 (HYN48_04835) panD 1176693..1177043 (-) 351 WP_108370050.1 aspartate 1-decarboxylase -
  HYN48_RS04840 (HYN48_04840) panC 1177057..1177905 (-) 849 WP_108370051.1 pantoate--beta-alanine ligase -
  HYN48_RS04845 (HYN48_04845) - 1178012..1178818 (+) 807 WP_108370052.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49939.64 Da        Isoelectric Point: 6.6941

>NTDB_id=287870 HYN48_RS04820 WP_108370047.1 1173163..1174521(-) (radA) [Flavobacterium magnum strain HYN0048]
MSKIKTAFFCQHCGTQYPKWQGQCNACKQWNTIVEEVIQKEEKTSWKPSAENKKAAKPLKIEEIDSAQEIRMDSLDGELN
RVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERITSRANNCYILTETKTQHIFHQIR
EIEPEVVIIDSIQTLHTDYIEASPGSILQIRECTAELIKFAKETNVPVILIGHITKDGSIAGPKILEHMVDTVLQFEGDR
NHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISPKSEELSGTAIASTMEGMRPLMIEIQALVSTAVYGTPQ
RSTTGYNAKRLNMILAVLEKRAGFRLGTKDVFLNITGGITVDDPAIDLAVVAAILSSNEDIPVGKDFCFAAEVGLSGEIR
PVNRIEQRIQEAEKLGFSSIFVSKHNKIPVKDFGIKVLMVGRIEEVAGELFG

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=287870 HYN48_RS04820 WP_108370047.1 1173163..1174521(-) (radA) [Flavobacterium magnum strain HYN0048]
ATGTCGAAAATAAAGACGGCTTTTTTTTGCCAGCATTGCGGGACACAGTACCCAAAATGGCAGGGACAGTGTAACGCCTG
CAAGCAGTGGAACACGATTGTGGAGGAGGTCATACAGAAAGAGGAAAAAACGTCCTGGAAGCCGTCGGCCGAAAATAAGA
AAGCGGCCAAACCCCTTAAAATCGAAGAAATCGATTCGGCGCAGGAAATCCGGATGGACAGCCTCGACGGCGAATTGAAC
CGTGTCCTCGGCGGCGGCATCGTGCCCGGATCGTTAATCCTGCTGGGCGGCGAACCCGGCATCGGCAAAAGCACACTGCT
GCTGCAGATTTCGCTCAAACTGCCTTACCGTACCTTGTATGTTTCAGGCGAAGAAAGCCAGAAGCAGATTAAAATGCGCG
CGGAACGGATTACCAGCCGCGCCAACAACTGCTACATTTTAACCGAAACCAAAACCCAGCACATCTTTCACCAGATTCGT
GAAATCGAGCCAGAAGTCGTCATCATCGATTCAATACAAACGCTGCATACGGATTACATCGAAGCCTCCCCCGGAAGTAT
TTTGCAAATCCGGGAATGCACCGCGGAACTGATCAAATTTGCCAAAGAAACGAACGTCCCCGTCATCCTTATCGGGCATA
TTACCAAAGACGGCAGCATTGCCGGGCCGAAAATCCTCGAGCACATGGTCGATACCGTGTTGCAGTTTGAAGGCGACCGC
AACCATGTATACCGTATCCTGCGCTCGCTGAAAAATCGTTTCGGCTCTACCGCGGAATTGGGCATTTATGAAATGCAGGG
CAGCGGACTGCGCGAAGTATCCAATCCGTCTGAAATACTGATTTCACCGAAAAGTGAGGAATTATCCGGTACGGCCATCG
CATCCACCATGGAAGGCATGCGTCCGCTGATGATCGAAATCCAGGCGTTGGTCAGCACTGCAGTCTATGGCACGCCACAA
CGGAGCACGACCGGGTACAATGCCAAAAGGCTCAACATGATCTTAGCTGTCCTGGAAAAACGCGCCGGCTTCAGACTCGG
TACCAAGGACGTTTTCCTGAACATCACCGGAGGTATCACCGTAGACGATCCGGCAATAGACCTCGCCGTAGTGGCAGCAA
TCCTTTCCTCGAACGAAGATATTCCTGTAGGAAAAGATTTTTGTTTTGCTGCGGAAGTCGGGCTTTCCGGCGAAATACGT
CCGGTAAATCGTATCGAACAACGCATACAGGAAGCCGAGAAACTCGGATTTTCGAGTATTTTTGTATCGAAGCACAATAA
AATCCCTGTAAAAGACTTTGGCATTAAGGTACTGATGGTCGGGAGGATTGAAGAAGTGGCCGGAGAACTGTTCGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(314-426)

AAA domain (AAA_25)

(78-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0RCI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

49.561

100

0.5
  radA Streptococcus pneumoniae Rx1

49.234

100

0.498
  radA Streptococcus pneumoniae R6

49.234

100

0.498
  radA Streptococcus pneumoniae TIGR4

49.234

100

0.498
  radA Streptococcus pneumoniae D39

49.234

100

0.498
  radA Streptococcus mitis SK321

49.339

100

0.496
  radA Bacillus subtilis subsp. subtilis str. 168

48.908

100

0.496

Multiple sequence alignment