Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MBOO_RS07845 Genome accession   NC_009712
Coordinates   1557549..1559618 (-) Length   689 a.a.
NCBI ID   WP_083756195.1    Uniprot ID   -
Organism   Methanoregula boonei 6A8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552549..1564618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MBOO_RS13105 (Mboo_1497) - 1555511..1556653 (+) 1143 WP_012107054.1 response regulator -
  MBOO_RS07845 (Mboo_1500) epdL 1557549..1559618 (-) 2070 WP_083756195.1 type II/IV secretion system ATPase subunit Machinery gene
  MBOO_RS07850 (Mboo_1501) - 1561073..1563499 (+) 2427 WP_048068376.1 plasma-membrane proton-efflux P-type ATPase -

Sequence

Protein


Download         Length: 689 a.a.        Molecular weight: 78155.92 Da        Isoelectric Point: 5.1948

>NTDB_id=28786 MBOO_RS07845 WP_083756195.1 1557549..1559618(-) (epdL) [Methanoregula boonei 6A8]
MLKSQDAVAHDEISTLLKKIHGIQTPEDGTAGPAASPRPEPVVESIEDDTLTSLYSREKTAITKEVSKKTSADTVPGDTD
ERIISVDQIFDLPDLILPKGATFRIDEIKLHGSFNAFERSGIGILPGEVADIWKREFSNAGFRDLETKQFPEQETSKKSS
AKKSGLAALFSSVLHSATVDYDPRLHGPLVDLSFEPRPGIEEMEMYPINAPYAYVRVIYDHSTHEYTYQMIEPVLSASEK
DQLVELKERLSDTLDINTNDVSKEEAQRLFRKSVDDILADFGIRLSPVEREKILYNLHKDFLGDGQIDAIMHDKYIEDIS
CDGVNVPLFAFHAGYESMQTTLMYHNAEELDSFVTKLAQRSGKYISIAEPILDATMGDGSRIQMTLGQEVTAHGSTFTIR
KFKDEPITPVDLIEWHTFSPLSVAYIWLAVENGKSALFAGGTASGKTTALNAISLFIPPMAKIVSLEDTRELKLPHPNWI
PSITRESFDMKGRGEINMYELLRAAMRQRPEYIVVGEVRGKECQTLFQAMSTGHVTYSTIHADSVSSIVHRIENPPMDVP
RNMFSALDFVCIQVQVQMGGKRIRRNKRIVEIIGIDPRTNELITNEVFKWRSATDEITYSGKSYILEEIMEARGWNENQM
REELKRRQEVLEWMRIKKIRNYKEVAKLLISYYREPDAIIERVRKDLYE

Nucleotide


Download         Length: 2070 bp        

>NTDB_id=28786 MBOO_RS07845 WP_083756195.1 1557549..1559618(-) (epdL) [Methanoregula boonei 6A8]
ATGTTGAAATCACAGGATGCTGTGGCTCACGACGAGATAAGCACCCTTCTTAAAAAAATCCATGGGATACAGACGCCGGA
AGATGGAACAGCCGGCCCGGCTGCCTCACCCCGACCGGAACCTGTGGTCGAGAGTATTGAAGATGATACCCTAACCTCCT
TATATTCCCGGGAAAAAACCGCAATAACAAAAGAGGTATCCAAAAAGACGTCTGCCGATACGGTTCCTGGTGATACCGAT
GAGCGGATCATCTCTGTTGACCAGATCTTCGATCTCCCGGATCTTATCCTCCCAAAAGGTGCAACATTCCGGATCGATGA
GATCAAACTTCATGGCAGCTTTAACGCCTTTGAGCGCTCCGGGATCGGAATCCTGCCCGGGGAGGTTGCAGATATATGGA
AGCGGGAATTTTCAAACGCAGGGTTCAGGGATCTCGAAACAAAACAGTTCCCTGAACAGGAAACGTCAAAAAAATCTTCG
GCAAAGAAATCCGGACTGGCAGCACTTTTCAGCAGCGTCCTGCATTCCGCAACTGTGGACTATGATCCCAGATTACATGG
CCCCCTTGTAGATCTCTCATTTGAACCAAGACCCGGCATTGAAGAGATGGAGATGTATCCCATCAATGCCCCCTATGCAT
ATGTCCGCGTCATCTATGATCACTCAACGCATGAATACACGTACCAGATGATAGAACCCGTTCTTTCCGCATCCGAAAAA
GATCAGTTAGTGGAATTAAAAGAACGCCTCTCAGACACTCTCGATATCAACACCAATGATGTTTCCAAAGAGGAGGCGCA
GCGCCTGTTCAGGAAGTCTGTGGATGATATCCTGGCAGATTTCGGGATCAGGCTCAGCCCGGTCGAGCGTGAGAAGATCC
TCTATAACCTGCACAAGGATTTTCTGGGTGATGGCCAGATCGATGCGATCATGCATGACAAGTACATCGAGGATATTTCC
TGCGATGGTGTCAATGTTCCCTTATTTGCATTCCATGCCGGTTACGAATCGATGCAGACTACGCTGATGTACCATAATGC
CGAGGAACTCGATTCATTTGTCACGAAACTTGCCCAGCGTTCCGGCAAGTACATCTCCATTGCGGAACCCATCCTCGATG
CGACCATGGGCGATGGTTCCCGTATCCAGATGACCCTTGGGCAGGAGGTAACCGCTCACGGCTCAACATTTACCATCCGC
AAGTTCAAGGATGAGCCGATCACCCCGGTAGATCTTATCGAATGGCACACGTTTTCCCCGCTTTCGGTTGCCTATATCTG
GCTTGCCGTCGAGAATGGCAAATCCGCTCTTTTCGCCGGGGGAACCGCATCCGGTAAGACCACAGCATTAAACGCGATCT
CTCTTTTTATTCCCCCGATGGCAAAGATCGTCAGCCTTGAAGACACACGGGAATTGAAGCTTCCCCACCCCAACTGGATC
CCGAGTATAACGCGGGAGTCGTTTGATATGAAAGGACGCGGAGAGATCAACATGTACGAACTCCTGCGTGCGGCCATGCG
GCAGCGACCTGAGTATATTGTTGTAGGGGAAGTCCGTGGCAAGGAATGCCAGACGCTCTTCCAGGCGATGAGCACCGGCC
ATGTCACGTACTCTACGATCCACGCGGACTCGGTGTCAAGCATCGTCCACCGCATCGAGAACCCGCCCATGGATGTGCCA
CGGAATATGTTCTCGGCACTCGATTTTGTCTGCATCCAAGTGCAGGTCCAGATGGGAGGCAAACGTATCCGTCGGAATAA
GCGGATCGTTGAGATCATCGGGATCGACCCACGGACAAACGAACTGATCACAAACGAGGTTTTCAAATGGCGGTCGGCAA
CCGATGAAATTACCTATTCGGGGAAGTCCTACATCCTTGAAGAGATCATGGAGGCCCGTGGCTGGAACGAGAACCAGATG
CGGGAGGAACTCAAGCGCCGGCAGGAAGTGCTGGAGTGGATGCGCATCAAAAAGATCCGGAATTACAAGGAGGTCGCCAA
GCTCCTCATCTCCTATTACCGTGAACCCGACGCCATTATAGAACGCGTAAGGAAGGACCTGTATGAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(341-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

64.123

89.405

0.573

Multiple sequence alignment