Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SK875_RS12210 Genome accession   NZ_CP028807
Coordinates   2528086..2529462 (+) Length   458 a.a.
NCBI ID   WP_039342661.1    Uniprot ID   A0A4R4C5L8
Organism   Burkholderia contaminans strain SK875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2523086..2534462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK875_RS12190 (SK875_A02332) - 2523626..2524591 (+) 966 WP_039342652.1 DUF1853 family protein -
  SK875_RS12195 (SK875_A02333) thiD 2524610..2525419 (-) 810 WP_039342655.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SK875_RS12200 (SK875_A02334) lplT 2525478..2526785 (-) 1308 WP_039342658.1 lysophospholipid transporter LplT -
  SK875_RS12205 (SK875_A02335) alr 2527004..2528074 (+) 1071 WP_039342660.1 alanine racemase -
  SK875_RS12210 (SK875_A02336) radA 2528086..2529462 (+) 1377 WP_039342661.1 DNA repair protein RadA Machinery gene
  SK875_RS12215 (SK875_A02337) - 2529609..2529875 (+) 267 WP_039342663.1 DUF2866 domain-containing protein -
  SK875_RS12220 (SK875_A02338) - 2530074..2532011 (-) 1938 WP_039342666.1 ATP-binding cassette domain-containing protein -
  SK875_RS12225 (SK875_A02339) - 2532148..2532627 (+) 480 WP_039342668.1 glutathione peroxidase -
  SK875_RS12230 (SK875_A02340) cls 2532688..2534127 (-) 1440 WP_039342669.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48761.17 Da        Isoelectric Point: 6.9555

>NTDB_id=287859 SK875_RS12210 WP_039342661.1 2528086..2529462(+) (radA) [Burkholderia contaminans strain SK875]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASARRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIAAFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=287859 SK875_RS12210 WP_039342661.1 2528086..2529462(+) (radA) [Burkholderia contaminans strain SK875]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGCCAATGCCCGTCGTG
CCAGGCCTGGAACACGCTGGTTGAATCGGTCGCCGAATCGCCCGCTGCCCATCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGTCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGCGCGGCGCGCACTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCGGATGAGCTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGATACCGTGCTGTACTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGTGCGTTCAAGAACCGCTTCGGTGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGTCTGCGCGGCGTCGCGAATCCGTCCGCCCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGTCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCATGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGGCCTTCGACCAGGACGTGTTCCTGAATGCCGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAACGGCTGCGCGAGGCGGCGAAGCTCGGTTTTACGTCCGCGCTGATTCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAACAGGCGATCGACCGCG
TGCGCGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R4C5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465

Multiple sequence alignment