Detailed information NTG0287793

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CDG57_RS01995
• Genome accession: NZ_CP028800
• Coordinates: 370340..370765 (+)
• Length: 141 a.a.
• NCBI ID: WP_087539597.1
• Uniprot ID: -
• Organism: Acinetobacter junii strain WCHAJ59
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 365340..375765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG57_RS01980 (CDG57_01990)	-	365388..366074 (+)	687	WP_087539603.1	pilus assembly protein PilX	-
CDG57_RS01985 (CDG57_01995)	-	366092..369637 (+)	3546	WP_087539601.1	PilC/PilY family type IV pilus protein	-
CDG57_RS01990 (CDG57_02000)	-	369648..370340 (+)	693	WP_087539599.1	type IV pilin protein	-
CDG57_RS01995 (CDG57_02005)	comF	370340..370765 (+)	426	WP_087539597.1	type IV pilin protein	Machinery gene
CDG57_RS02000 (CDG57_02010)	rpsP	370969..371226 (+)	258	WP_087539655.1	30S ribosomal protein S16	-
CDG57_RS02005 (CDG57_02015)	rimM	371243..371791 (+)	549	WP_087539595.1	ribosome maturation factor RimM	-
CDG57_RS02010 (CDG57_02020)	trmD	371834..372574 (+)	741	WP_004909546.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CDG57_RS02015 (CDG57_02025)	rplS	372805..373176 (+)	372	WP_004660214.1	50S ribosomal protein L19	-
CDG57_RS02020 (CDG57_02030)	-	373234..374208 (-)	975	WP_087539654.1	lipase family alpha/beta hydrolase	-
CDG57_RS02025 (CDG57_02035)	-	374314..375357 (-)	1044	WP_087539593.1	lipase secretion chaperone	-

Sequence

Protein

• Length: 141 a.a.
• Molecular weight: 15521.67 Da
• Isoelectric Point: 8.9007

>NTDB_id=287793 CDG57_RS01995 WP_087539597.1 370340..370765(+) (comF) [Acinetobacter junii strain WCHAJ59]
MKKYSLAFTLIELMIVVAIIGILAAIAYPSYTQYKIRTNRADVQSEMMQIAQRLQSYYVINHNYTNARLDNGTVSKAYPA
SGSVYTITLAPLDQTWTLTAVPTPSTVQDGNGAVVLNSQGQKCWEKGTTCSVSASSNWESR

Nucleotide

• Length: 426 bp

>NTDB_id=287793 CDG57_RS01995 WP_087539597.1 370340..370765(+) (comF) [Acinetobacter junii strain WCHAJ59]
ATGAAAAAATACTCTTTAGCATTTACTTTAATTGAATTAATGATTGTTGTCGCAATTATTGGCATCTTGGCAGCAATTGC
TTATCCATCTTACACACAGTACAAAATCCGTACCAATCGGGCAGATGTGCAAAGTGAAATGATGCAAATAGCCCAACGGT
TACAGAGTTATTATGTCATCAATCATAATTATACCAACGCAAGATTGGACAATGGCACAGTGAGTAAAGCCTATCCTGCT
TCAGGAAGTGTATATACCATCACCCTTGCGCCACTCGATCAAACTTGGACGCTTACGGCAGTCCCAACCCCGAGTACAGT
TCAAGATGGCAATGGAGCAGTGGTGCTAAATAGCCAAGGACAAAAATGTTGGGAGAAAGGAACGACATGCAGTGTTTCTG
CTTCTTCAAATTGGGAAAGTCGTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (4-28)

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (29-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	56.115	98.582	0.553
pilE	Acinetobacter baumannii D1279779	52.941	96.454	0.511