Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY55_RS15595 Genome accession   NZ_CP028770
Coordinates   3206899..3207528 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3201899..3212528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY55_RS15580 (AOY55_16545) helD 3202141..3204195 (-) 2055 WP_001350178.1 DNA helicase IV -
  AOY55_RS15585 (AOY55_16550) yccF 3204318..3204764 (+) 447 WP_001261236.1 YccF domain-containing protein -
  AOY55_RS15590 (AOY55_16555) yccS 3204774..3206936 (+) 2163 WP_000875008.1 YccS family putative transporter -
  AOY55_RS15595 (AOY55_16560) sxy/tfoX 3206899..3207528 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY55_RS15600 (AOY55_16565) sulA 3207747..3208256 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  AOY55_RS15605 (AOY55_16575) ompA 3208612..3209652 (+) 1041 WP_001518466.1 porin OmpA -
  AOY55_RS15610 (AOY55_16580) matP 3209728..3210180 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  AOY55_RS15615 (AOY55_16585) ycbZ 3210366..3212126 (+) 1761 WP_000156492.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287639 AOY55_RS15595 WP_000839153.1 3206899..3207528(-) (sxy/tfoX) [Escherichia coli strain A4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287639 AOY55_RS15595 WP_000839153.1 3206899..3207528(-) (sxy/tfoX) [Escherichia coli strain A4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment