Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   EHF38_RS01665 Genome accession   NZ_CP034092
Coordinates   351307..351627 (+) Length   106 a.a.
NCBI ID   WP_128385708.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346307..356627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS01655 (EHF38_01655) - 346447..349974 (+) 3528 Protein_314 PilC/PilY family type IV pilus protein -
  EHF38_RS01660 (EHF38_01660) - 350009..351217 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  EHF38_RS01665 (EHF38_01665) pilY1 351307..351627 (+) 321 WP_128385708.1 hypothetical protein Machinery gene
  EHF38_RS01670 (EHF38_01670) pilY2 351640..352122 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  EHF38_RS01675 (EHF38_01675) pilE 352119..352544 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  EHF38_RS01680 (EHF38_01680) rpsP 352691..352942 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  EHF38_RS01685 (EHF38_01685) rimM 352962..353510 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  EHF38_RS01690 (EHF38_01690) trmD 353556..354296 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  EHF38_RS01695 (EHF38_01695) rplS 354504..354872 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  EHF38_RS01700 (EHF38_01700) - 354924..355865 (-) 942 WP_085916958.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11621.86 Da        Isoelectric Point: 7.0378

>NTDB_id=287633 EHF38_RS01665 WP_128385708.1 351307..351627(+) (pilY1) [Acinetobacter baumannii strain A52]
MGETDRQTYCLPFGACLNPDGTINSNKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQL
SGNENGTGEWQCTSHLHPVRWYERYR

Nucleotide


Download         Length: 321 bp        

>NTDB_id=287633 EHF38_RS01665 WP_128385708.1 351307..351627(+) (pilY1) [Acinetobacter baumannii strain A52]
GTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACCATTAATTCAAATAA
AGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAATACAAATGTCATTG
GTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTGGCAAATTACAGCTG
TCTGGAAACGAGAACGGAACAGGTGAGTGGCAGTGTACAAGTCATTTACATCCTGTGCGCTGGTATGAGCGCTATCGCTA
G

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

77.358

100

0.774