Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   EHF38_RS01635 Genome accession   NZ_CP034092
Coordinates   343591..344064 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338591..349064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS01610 (EHF38_01610) - 339054..341159 (-) 2106 WP_020753492.1 HD domain-containing protein -
  EHF38_RS01615 (EHF38_01615) - 341199..341329 (-) 131 Protein_306 hypothetical protein -
  EHF38_RS01620 (EHF38_01620) rpoZ 341368..341646 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EHF38_RS01625 (EHF38_01625) gmk 341719..342348 (-) 630 WP_000015936.1 guanylate kinase -
  EHF38_RS01630 (EHF38_01630) ispH 342471..343421 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EHF38_RS01635 (EHF38_01635) fimU 343591..344064 (+) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  EHF38_RS01640 (EHF38_01640) pilV 344058..344618 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  EHF38_RS01645 (EHF38_01645) pilW 344619..345620 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  EHF38_RS01650 (EHF38_01650) pilX 345617..346435 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=287629 EHF38_RS01635 WP_001214068.1 343591..344064(+) (fimU) [Acinetobacter baumannii strain A52]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=287629 EHF38_RS01635 WP_001214068.1 343591..344064(+) (fimU) [Acinetobacter baumannii strain A52]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994