Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EHU52_RS06645 Genome accession   NZ_CP034071
Coordinates   1355006..1355473 (+) Length   155 a.a.
NCBI ID   WP_164471958.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350006..1360473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS06625 dnaK 1350095..1351957 (+) 1863 WP_124733535.1 molecular chaperone DnaK -
  EHU52_RS06630 - 1352191..1352770 (-) 580 Protein_1261 hypothetical protein -
  EHU52_RS06635 - 1352878..1353795 (+) 918 WP_164471957.1 O-acetylserine-dependent cystathionine beta-synthase -
  EHU52_RS06640 - 1353829..1354971 (+) 1143 WP_124733538.1 cystathionine gamma-synthase -
  EHU52_RS06645 luxS 1355006..1355473 (+) 468 WP_164471958.1 S-ribosylhomocysteine lyase Regulator
  EHU52_RS06650 - 1355649..1357349 (+) 1701 WP_339326519.1 5'-nucleotidase C-terminal domain-containing protein -
  EHU52_RS06655 tlpB 1357555..1359252 (+) 1698 WP_124733540.1 methyl-accepting chemotaxis protein TlpB -
  EHU52_RS06660 - 1359283..1360065 (+) 783 WP_124733541.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17661.25 Da        Isoelectric Point: 7.4753

>NTDB_id=287614 EHU52_RS06645 WP_164471958.1 1355006..1355473(+) (luxS) [Helicobacter pylori strain Hpbs1]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=287614 EHU52_RS06645 WP_164471958.1 1355006..1355473(+) (luxS) [Helicobacter pylori strain Hpbs1]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCACGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCCAAGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374