Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSE_RS20325 Genome accession   NC_011415
Coordinates   4060081..4060749 (-) Length   222 a.a.
NCBI ID   WP_001352775.1    Uniprot ID   -
Organism   Escherichia coli SE11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4055081..4065749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSE_RS20295 (ECSE_3912) rfaQ 4055259..4056317 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  ECSE_RS20300 (ECSE_3913) waaA 4056730..4058007 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECSE_RS20305 (ECSE_3914) coaD 4058015..4058494 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ECSE_RS20310 (ECSE_3915) mutM 4058533..4059342 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECSE_RS20315 (ECSE_3916) rpmG 4059440..4059607 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECSE_RS20320 (ECSE_3917) rpmB 4059628..4059864 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECSE_RS20325 (ECSE_3918) radC 4060081..4060749 (-) 669 WP_001352775.1 RadC family protein Machinery gene
  ECSE_RS20330 (ECSE_3919) coaBC 4060921..4062141 (+) 1221 WP_000050152.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECSE_RS20335 (ECSE_3920) dut 4062119..4062577 (+) 459 WP_000976070.1 dUTP diphosphatase -
  ECSE_RS20340 (ECSE_3921) slmA 4062684..4063280 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ECSE_RS20345 (ECSE_3922) pyrE 4063317..4063958 (-) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  ECSE_RS20350 (ECSE_3923) rph 4064024..4064740 (-) 717 WP_001247093.1 ribonuclease PH -
  ECSE_RS20355 (ECSE_3924) yicC 4064867..4065730 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25292.38 Da        Isoelectric Point: 7.9748

>NTDB_id=28760 ECSE_RS20325 WP_001352775.1 4060081..4060749(-) (radC) [Escherichia coli SE11]
MKNNSQLMMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=28760 ECSE_RS20325 WP_001352775.1 4060081..4060749(-) (radC) [Escherichia coli SE11]
GTGAAAAACAATTCACAGCTGATGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment