Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EHU52_RS03360 Genome accession   NZ_CP034071
Coordinates   666159..667679 (+) Length   506 a.a.
NCBI ID   WP_124733126.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 661159..672679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS03330 moaC 661308..661784 (+) 477 WP_124733122.1 cyclic pyranopterin monophosphate synthase MoaC -
  EHU52_RS03335 hpaA 661903..662685 (+) 783 WP_124733123.1 flagellar sheath lipoprotein HpaA -
  EHU52_RS03340 - 662718..663548 (+) 831 WP_124733124.1 outer membrane protein -
  EHU52_RS03345 tig 663661..665016 (+) 1356 WP_124733125.1 trigger factor -
  EHU52_RS03350 clpP 665037..665624 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  EHU52_RS03355 def 665629..666156 (+) 528 WP_001185825.1 peptide deformylase -
  EHU52_RS03360 comM 666159..667679 (+) 1521 WP_124733126.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EHU52_RS03365 - 667704..669764 (+) 2061 WP_124733127.1 heavy metal translocating P-type ATPase -
  EHU52_RS03370 - 669800..671139 (+) 1340 Protein_624 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57206.33 Da        Isoelectric Point: 8.8365

>NTDB_id=287598 EHU52_RS03360 WP_124733126.1 666159..667679(+) (comM) [Helicobacter pylori strain Hpbs1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKKWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIVPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=287598 EHU52_RS03360 WP_124733126.1 666159..667679(+) (comM) [Helicobacter pylori strain Hpbs1]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAGATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAGCAAGAGTTGGCTTTTAAAAAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGTGCCTAAGGCTAATGAAGAGCTTTTTTCGCTTATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
TGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGTGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTCAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAACCTTTAGAAAACAATAAATTGGTGGTTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTAGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAATTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972