Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EHU52_RS01535 Genome accession   NZ_CP034071
Coordinates   292399..293448 (-) Length   349 a.a.
NCBI ID   WP_124732897.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 287399..298448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS01515 rpsL 288473..288880 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  EHU52_RS01520 rpsG 288896..289363 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  EHU52_RS01525 fusA 289375..291453 (+) 2079 WP_124732896.1 elongation factor G -
  EHU52_RS01530 - 291985..292203 (+) 219 WP_000744170.1 hypothetical protein -
  EHU52_RS01535 waaF 292399..293448 (-) 1050 WP_124732897.1 lipopolysaccharide heptosyltransferase II Regulator
  EHU52_RS01540 hisS 293510..294838 (+) 1329 WP_124732898.1 histidine--tRNA ligase -
  EHU52_RS01545 asd 294825..295865 (+) 1041 WP_124732899.1 aspartate-semialdehyde dehydrogenase -
  EHU52_RS01550 - 296296..297540 (+) 1245 WP_124732900.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39509.34 Da        Isoelectric Point: 9.9345

>NTDB_id=287591 EHU52_RS01535 WP_124732897.1 292399..293448(-) (waaF) [Helicobacter pylori strain Hpbs1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFHTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASHYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=287591 EHU52_RS01535 WP_124732897.1 292399..293448(-) (waaF) [Helicobacter pylori strain Hpbs1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTCACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTCATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACACCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.135

97.994

0.364