Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY63_RS14880 Genome accession   NZ_CP028764
Coordinates   3075313..3075942 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3070313..3080942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY63_RS14865 (AOY63_15805) helD 3070555..3072609 (-) 2055 WP_001305911.1 DNA helicase IV -
  AOY63_RS14870 (AOY63_15810) yccF 3072732..3073178 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AOY63_RS14875 (AOY63_15815) yccS 3073188..3075350 (+) 2163 WP_000875037.1 YccS family putative transporter -
  AOY63_RS14880 (AOY63_15820) sxy/tfoX 3075313..3075942 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY63_RS14885 (AOY63_15825) sulA 3076161..3076670 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY63_RS14890 (AOY63_15835) ompA 3077027..3078079 (+) 1053 WP_001305912.1 porin OmpA -
  AOY63_RS14895 (AOY63_15840) matP 3078156..3078608 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AOY63_RS14900 (AOY63_15845) ycbZ 3078794..3080554 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287550 AOY63_RS14880 WP_000839153.1 3075313..3075942(-) (sxy/tfoX) [Escherichia coli strain A10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287550 AOY63_RS14880 WP_000839153.1 3075313..3075942(-) (sxy/tfoX) [Escherichia coli strain A10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment