Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY65_RS14645 Genome accession   NZ_CP028762
Coordinates   3003218..3003847 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2998218..3008847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY65_RS14630 (AOY65_15630) helD 2998460..3000514 (-) 2055 WP_001315388.1 DNA helicase IV -
  AOY65_RS14635 (AOY65_15635) yccF 3000637..3001083 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AOY65_RS14640 (AOY65_15640) yccS 3001093..3003255 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AOY65_RS14645 (AOY65_15645) sxy/tfoX 3003218..3003847 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY65_RS14650 (AOY65_15650) sulA 3004066..3004575 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY65_RS14655 (AOY65_15660) ompA 3004932..3005984 (+) 1053 WP_000750419.1 porin OmpA -
  AOY65_RS14660 (AOY65_15665) matP 3006059..3006511 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AOY65_RS14665 (AOY65_15670) ycbZ 3006697..3008457 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287506 AOY65_RS14645 WP_000839153.1 3003218..3003847(-) (sxy/tfoX) [Escherichia coli strain A12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287506 AOY65_RS14645 WP_000839153.1 3003218..3003847(-) (sxy/tfoX) [Escherichia coli strain A12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment