Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY66_RS08220 Genome accession   NZ_CP028761
Coordinates   1754395..1755024 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain A13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749395..1760024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY66_RS08200 (AOY66_08625) ycbZ 1749795..1751555 (-) 1761 WP_000156498.1 Lon protease family protein -
  AOY66_RS08205 (AOY66_08630) matP 1751741..1752193 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AOY66_RS08210 (AOY66_08635) ompA 1752271..1753311 (-) 1041 WP_001441917.1 porin OmpA -
  AOY66_RS08215 (AOY66_08645) sulA 1753667..1754176 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  AOY66_RS08220 (AOY66_08650) sxy/tfoX 1754395..1755024 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY66_RS08225 (AOY66_08655) yccS 1754987..1757149 (-) 2163 WP_000875009.1 YccS family putative transporter -
  AOY66_RS08230 (AOY66_08660) yccF 1757159..1757605 (-) 447 WP_001261236.1 YccF domain-containing protein -
  AOY66_RS08235 (AOY66_08665) helD 1757728..1759782 (+) 2055 WP_001441918.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=287474 AOY66_RS08220 WP_000839136.1 1754395..1755024(+) (sxy/tfoX) [Escherichia coli strain A13]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287474 AOY66_RS08220 WP_000839136.1 1754395..1755024(+) (sxy/tfoX) [Escherichia coli strain A13]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment