Detailed information NTG0028742

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECSE_RS15610
• Genome accession: NC_011415
• Coordinates: 3103879..3104871 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli SE11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3098879..3109871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECSE_RS15585 (ECSE_2988)	ygbN	3099534..3100898 (+)	1365	WP_000104439.1	GntP family transporter	-
ECSE_RS15590 (ECSE_2989)	-	3100937..3101173 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ECSE_RS15595 (ECSE_2990)	-	3101184..3102611 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ECSE_RS15600 (ECSE_2991)	-	3102611..3103204 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ECSE_RS15605 (ECSE_2992)	-	3103351..3103758 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
ECSE_RS15610 (ECSE_2993)	rpoS	3103879..3104871 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECSE_RS15615 (ECSE_2994)	nlpD	3104934..3106028 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ECSE_RS15620 (ECSE_2995)	pcm	3106213..3106839 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECSE_RS15625 (ECSE_2996)	surE	3106833..3107594 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECSE_RS15630 (ECSE_2997)	truD	3107575..3108624 (-)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
ECSE_RS15635 (ECSE_2998)	ispF	3108621..3109100 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECSE_RS15640 (ECSE_2999)	ispD	3109100..3109810 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=28742 ECSE_RS15610 WP_000081550.1 3103879..3104871(-) (rpoS) [Escherichia coli SE11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=28742 ECSE_RS15610 WP_000081550.1 3103879..3104871(-) (rpoS) [Escherichia coli SE11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715