Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY72_RS15100 Genome accession   NZ_CP028756
Coordinates   3086403..3087032 (-) Length   209 a.a.
NCBI ID   WP_201479341.1    Uniprot ID   -
Organism   Escherichia coli strain A19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081403..3092032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY72_RS15085 (AOY72_16055) helD 3081645..3083699 (-) 2055 WP_000420533.1 DNA helicase IV -
  AOY72_RS15090 (AOY72_16060) yccF 3083822..3084268 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AOY72_RS15095 (AOY72_16065) yccS 3084278..3086440 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AOY72_RS15100 (AOY72_16070) sxy/tfoX 3086403..3087032 (-) 630 WP_201479341.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY72_RS15105 (AOY72_16075) sulA 3087251..3087760 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY72_RS15110 (AOY72_16085) ompA 3088117..3089157 (+) 1041 WP_000750416.1 porin OmpA -
  AOY72_RS15115 (AOY72_16090) matP 3089233..3089685 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AOY72_RS15120 (AOY72_16095) ycbZ 3089871..3091631 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=287372 AOY72_RS15100 WP_201479341.1 3086403..3087032(-) (sxy/tfoX) [Escherichia coli strain A19]
MKSLSYKRIYKSQEYLATLGTIEYRSLFASYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287372 AOY72_RS15100 WP_201479341.1 3086403..3087032(-) (sxy/tfoX) [Escherichia coli strain A19]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGCCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment