Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY74_RS08455 Genome accession   NZ_CP028754
Coordinates   1805380..1806009 (+) Length   209 a.a.
NCBI ID   WP_001524444.1    Uniprot ID   -
Organism   Escherichia coli strain A21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800380..1811009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY74_RS08435 (AOY74_08920) ycbZ 1800769..1802529 (-) 1761 WP_000156502.1 Lon protease family protein -
  AOY74_RS08440 (AOY74_08925) matP 1802715..1803167 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AOY74_RS08445 (AOY74_08930) ompA 1803244..1804296 (-) 1053 WP_001346420.1 porin OmpA -
  AOY74_RS08450 (AOY74_08940) sulA 1804652..1805161 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  AOY74_RS08455 (AOY74_08945) sxy/tfoX 1805380..1806009 (+) 630 WP_001524444.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY74_RS08460 (AOY74_08950) yccS 1805972..1808134 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AOY74_RS08465 (AOY74_08955) yccF 1808144..1808590 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AOY74_RS08470 (AOY74_08960) helD 1808713..1810767 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24190.10 Da        Isoelectric Point: 9.0428

>NTDB_id=287318 AOY74_RS08455 WP_001524444.1 1805380..1806009(+) (sxy/tfoX) [Escherichia coli strain A21]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287318 AOY74_RS08455 WP_001524444.1 1805380..1806009(+) (sxy/tfoX) [Escherichia coli strain A21]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment