Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLI_RS05500 Genome accession   NC_009699
Coordinates   1178241..1179194 (+) Length   317 a.a.
NCBI ID   WP_011948718.1    Uniprot ID   A0A0M1LA37
Organism   Clostridium botulinum F str. Langeland     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1173241..1184194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI_RS05475 (CLI_1132) - 1173362..1173598 (+) 237 WP_011987954.1 SHOCT domain-containing protein -
  CLI_RS05480 (CLI_1133) - 1173868..1174569 (+) 702 WP_011987955.1 response regulator transcription factor -
  CLI_RS05485 (CLI_1134) - 1174569..1175975 (+) 1407 WP_011987956.1 HAMP domain-containing sensor histidine kinase -
  CLI_RS05490 (CLI_1135) - 1176315..1177001 (-) 687 WP_011987957.1 DNA alkylation repair protein -
  CLI_RS05495 (CLI_1136) - 1177237..1177995 (-) 759 WP_003388491.1 AraC family transcriptional regulator -
  CLI_RS05500 (CLI_1137) ceuB 1178241..1179194 (+) 954 WP_011948718.1 ABC transporter permease Machinery gene
  CLI_RS05505 (CLI_1138) - 1179184..1180134 (+) 951 WP_011987958.1 iron chelate uptake ABC transporter family permease subunit -
  CLI_RS05510 (CLI_1139) - 1180131..1180886 (+) 756 WP_011948720.1 ATP-binding cassette domain-containing protein -
  CLI_RS05515 (CLI_1140) - 1180960..1181904 (+) 945 WP_011987959.1 siderophore ABC transporter substrate-binding protein -
  CLI_RS05520 (CLI_1141) - 1182106..1183107 (+) 1002 WP_011987960.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34889.26 Da        Isoelectric Point: 9.9543

>NTDB_id=28729 CLI_RS05500 WP_011948718.1 1178241..1179194(+) (ceuB) [Clostridium botulinum F str. Langeland]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=28729 CLI_RS05500 WP_011948718.1 1178241..1179194(+) (ceuB) [Clostridium botulinum F str. Langeland]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTTGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTGCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTGGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1LA37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment