Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY78_RS08325 Genome accession   NZ_CP028750
Coordinates   1746530..1747159 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741530..1752159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY78_RS08305 (AOY78_08790) ycbZ 1741921..1743681 (-) 1761 WP_024231838.1 Lon protease family protein -
  AOY78_RS08310 (AOY78_08795) matP 1743867..1744319 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AOY78_RS08315 (AOY78_08800) ompA 1744395..1745447 (-) 1053 WP_032328838.1 porin OmpA -
  AOY78_RS08320 (AOY78_08810) sulA 1745803..1746312 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  AOY78_RS08325 (AOY78_08815) sxy/tfoX 1746530..1747159 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY78_RS08330 (AOY78_08820) yccS 1747122..1749284 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AOY78_RS08335 (AOY78_08825) yccF 1749294..1749740 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AOY78_RS08340 (AOY78_08830) helD 1749863..1751917 (+) 2055 WP_024248145.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287227 AOY78_RS08325 WP_000839153.1 1746530..1747159(+) (sxy/tfoX) [Escherichia coli strain A25]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287227 AOY78_RS08325 WP_000839153.1 1746530..1747159(+) (sxy/tfoX) [Escherichia coli strain A25]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCTGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGAGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment