Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | AOY82_RS14170 | Genome accession | NZ_CP028746 |
| Coordinates | 2925847..2926476 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain A29 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2916675..2954213 | 2925847..2926476 | within | 0 |
Gene organization within MGE regions
Location: 2916675..2954213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY82_RS14120 (AOY82_15020) | tusE | 2916946..2917275 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| AOY82_RS14125 (AOY82_15025) | yccX | 2917272..2917550 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| AOY82_RS14130 (AOY82_15030) | rlmI | 2917645..2918835 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| AOY82_RS14135 (AOY82_15035) | hspQ | 2918893..2919210 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| AOY82_RS14140 (AOY82_15040) | yccU | 2919255..2919668 (-) | 414 | WP_001301418.1 | CoA-binding protein | - |
| AOY82_RS14145 (AOY82_15045) | yccT | 2919841..2920503 (+) | 663 | WP_053275137.1 | DUF2057 family protein | - |
| AOY82_RS14150 (AOY82_15050) | mgsA | 2920599..2921057 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| AOY82_RS14155 (AOY82_15055) | helD | 2921089..2923143 (-) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| AOY82_RS14160 (AOY82_15060) | yccF | 2923266..2923712 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| AOY82_RS14165 (AOY82_15065) | yccS | 2923722..2925884 (+) | 2163 | WP_000875061.1 | YccS family putative transporter | - |
| AOY82_RS14170 (AOY82_15070) | sxy/tfoX | 2925847..2926476 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| AOY82_RS14175 (AOY82_15075) | sulA | 2926695..2927204 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| AOY82_RS14180 (AOY82_15085) | ompA | 2927561..2928613 (+) | 1053 | WP_001307702.1 | porin OmpA | - |
| AOY82_RS14185 (AOY82_15090) | matP | 2928688..2929140 (-) | 453 | WP_000877158.1 | macrodomain Ter protein MatP | - |
| AOY82_RS14190 (AOY82_15095) | ycbZ | 2929326..2931086 (+) | 1761 | WP_000156516.1 | Lon protease family protein | - |
| AOY82_RS14195 (AOY82_15100) | fabA | 2931155..2931673 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| AOY82_RS14200 (AOY82_15105) | rmf | 2931743..2931910 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| AOY82_RS14205 (AOY82_15110) | pqiC | 2932166..2932729 (-) | 564 | WP_000759095.1 | membrane integrity-associated transporter subunit PqiC | - |
| AOY82_RS14210 (AOY82_15115) | pqiB | 2932726..2934366 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| AOY82_RS14215 (AOY82_15120) | pqiA | 2934371..2935624 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| AOY82_RS14220 (AOY82_15125) | uup | 2935754..2937661 (-) | 1908 | WP_000053091.1 | ABC transporter ATP-binding protein | - |
| AOY82_RS14225 (AOY82_15130) | rlmKL | 2937673..2939781 (-) | 2109 | WP_201479643.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| AOY82_RS14230 (AOY82_15135) | ycbX | 2940025..2941134 (+) | 1110 | WP_021553510.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| AOY82_RS14235 (AOY82_15140) | zapC | 2941131..2941673 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| AOY82_RS14240 (AOY82_15145) | pyrD | 2941847..2942857 (-) | 1011 | WP_001312721.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| AOY82_RS14245 (AOY82_15150) | ycbF | 2942968..2943705 (-) | 738 | WP_160454519.1 | fimbrial chaperone | - |
| AOY82_RS14250 (AOY82_15155) | ycbV | 2943671..2944186 (-) | 516 | WP_000919493.1 | fimbrial protein | - |
| AOY82_RS14255 (AOY82_15160) | ycbU | 2944194..2944736 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| AOY82_RS14260 (AOY82_15165) | elfG | 2944748..2945818 (-) | 1071 | WP_001165668.1 | fimbrial protein | - |
| AOY82_RS14265 (AOY82_15170) | elfC | 2945809..2948409 (-) | 2601 | WP_000286333.1 | fimbrial biogenesis usher protein | - |
| AOY82_RS14270 (AOY82_15175) | elfD | 2948434..2949135 (-) | 702 | WP_016242023.1 | molecular chaperone | - |
| AOY82_RS14275 (AOY82_15180) | - | 2949218..2949490 (-) | 273 | Protein_2805 | fimbrial protein | - |
| AOY82_RS14280 (AOY82_15185) | - | 2949547..2950698 (+) | 1152 | WP_001254932.1 | IS30-like element IS30 family transposase | - |
| AOY82_RS14285 (AOY82_15190) | - | 2950705..2950983 (-) | 279 | Protein_2807 | hypothetical protein | - |
| AOY82_RS14290 (AOY82_15200) | ssuE | 2951339..2951914 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| AOY82_RS14295 (AOY82_15205) | ssuA | 2951907..2952866 (+) | 960 | WP_001244342.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| AOY82_RS14300 (AOY82_15210) | ssuD | 2952863..2954008 (+) | 1146 | WP_000056006.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=287146 AOY82_RS14170 WP_000839153.1 2925847..2926476(-) (sxy/tfoX) [Escherichia coli strain A29]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=287146 AOY82_RS14170 WP_000839153.1 2925847..2926476(-) (sxy/tfoX) [Escherichia coli strain A29]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |