Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH12_RS10575 Genome accession   NZ_CP034020
Coordinates   1794347..1794490 (+) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789347..1799490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH12_RS10540 (EGH12_10540) - 1790008..1790403 (+) 396 Protein_1819 pilin -
  EGH12_RS10550 (EGH12_10550) - 1790941..1791339 (+) 399 Protein_1820 pilin -
  EGH12_RS10555 (EGH12_10555) - 1791543..1791929 (+) 387 Protein_1821 pilin -
  EGH12_RS10560 (EGH12_10560) lpxC 1792432..1793355 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH12_RS10565 (EGH12_10565) - 1793484..1793882 (+) 399 Protein_1823 pilin -
  EGH12_RS10575 (EGH12_10575) pilE 1794347..1794490 (+) 144 WP_012503975.1 hypothetical protein Machinery gene
  EGH12_RS10580 (EGH12_10580) pilE 1794867..1795385 (+) 519 WP_124935101.1 pilin Machinery gene
  EGH12_RS10585 (EGH12_10585) pilA 1795688..1796941 (-) 1254 WP_047921365.1 signal recognition particle-docking protein FtsY Machinery gene
  EGH12_RS10595 (EGH12_10595) msrAB 1797087..1798655 (+) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  EGH12_RS10600 (EGH12_10600) - 1798739..1799224 (-) 486 WP_003687001.1 CinA family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=287136 EGH12_RS10575 WP_012503975.1 1794347..1794490(+) (pilE) [Neisseria gonorrhoeae strain FQ48]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=287136 EGH12_RS10575 WP_012503975.1 1794347..1794490(+) (pilE) [Neisseria gonorrhoeae strain FQ48]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447