Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY85_RS08885 Genome accession   NZ_CP028743
Coordinates   1856117..1856746 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain A32     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1851117..1861746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY85_RS08865 (AOY85_09350) ycbZ 1851519..1853279 (-) 1761 WP_033549876.1 Lon protease family protein -
  AOY85_RS08870 (AOY85_09355) matP 1853465..1853917 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  AOY85_RS08875 (AOY85_09360) ompA 1853993..1855033 (-) 1041 WP_001313715.1 porin OmpA -
  AOY85_RS08880 (AOY85_09370) sulA 1855389..1855898 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  AOY85_RS08885 (AOY85_09375) sxy/tfoX 1856117..1856746 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY85_RS08890 (AOY85_09380) yccS 1856709..1858871 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AOY85_RS08895 (AOY85_09385) yccF 1858881..1859327 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AOY85_RS08900 (AOY85_09390) helD 1859450..1861504 (+) 2055 WP_033549873.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=287070 AOY85_RS08885 WP_000839136.1 1856117..1856746(+) (sxy/tfoX) [Escherichia coli strain A32]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287070 AOY85_RS08885 WP_000839136.1 1856117..1856746(+) (sxy/tfoX) [Escherichia coli strain A32]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment