Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSE_RS01545 Genome accession   NC_011415
Coordinates   326714..327256 (+) Length   180 a.a.
NCBI ID   WP_001090453.1    Uniprot ID   -
Organism   Escherichia coli SE11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 321714..332256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSE_RS01500 (ECSE_0289) - 321721..322596 (+) 876 WP_001039472.1 GTPase family protein -
  ECSE_RS26300 (ECSE_0290) - 322797..323501 (+) 705 WP_000083853.1 helix-turn-helix transcriptional regulator -
  ECSE_RS01515 (ECSE_0291) - 323501..324070 (+) 570 WP_000722972.1 hypothetical protein -
  ECSE_RS01520 (ECSE_0292) - 324107..324559 (+) 453 WP_000737933.1 YfjS/YafY family lipoprotein -
  ECSE_RS01525 (ECSE_0293) - 324556..325005 (+) 450 WP_000734140.1 IrmA family protein -
  ECSE_RS01530 (ECSE_0294) - 325077..325307 (+) 231 WP_001114680.1 DUF905 domain-containing protein -
  ECSE_RS01535 (ECSE_0295) - 325406..326227 (+) 822 WP_001234416.1 DUF932 domain-containing protein -
  ECSE_RS01540 (ECSE_0296) - 326258..326701 (+) 444 WP_001093282.1 antirestriction protein -
  ECSE_RS01545 (ECSE_0297) radC 326714..327256 (+) 543 WP_001090453.1 RadC family protein Machinery gene
  ECSE_RS01550 (ECSE_0298) - 327267..327608 (+) 342 WP_000842923.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECSE_RS01555 (ECSE_0299) - 327629..327994 (+) 366 WP_000854674.1 TA system toxin CbtA family protein -
  ECSE_RS01560 (ECSE_0300) - 328321..328659 (-) 339 Protein_298 LysR substrate-binding domain-containing protein -
  ECSE_RS01565 (ECSE_0301) paoD 328710..329666 (-) 957 WP_000121326.1 molybdenum cofactor insertion chaperone PaoD -
  ECSE_RS01570 (ECSE_0302) paoC 329676..331874 (-) 2199 WP_000667026.1 aldehyde oxidoreductase molybdenum-binding subunit PaoC -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19969.72 Da        Isoelectric Point: 6.8450

>NTDB_id=28706 ECSE_RS01545 WP_001090453.1 326714..327256(+) (radC) [Escherichia coli SE11]
MNTALSPLSSQPELFPLAVMAQHDYLLTATSGLTPYAQRTIRRATNLLDKYLRQPGISFTSSTAARDWLRLQLAGQEREV
FMVLYLDNQHRLLESETLFAGSINHVQVHPREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALALVDVNT
LDHLVIGSDGIVSFAERGWI

Nucleotide


Download         Length: 543 bp        

>NTDB_id=28706 ECSE_RS01545 WP_001090453.1 326714..327256(+) (radC) [Escherichia coli SE11]
ATGAATACCGCATTATCCCCGCTGTCATCTCAGCCTGAACTTTTTCCACTGGCGGTTATGGCTCAACATGATTACCTGCT
TACCGCGACATCCGGATTAACACCCTATGCTCAACGGACCATCCGACGCGCTACCAATCTGCTGGATAAATATCTGCGCC
AGCCCGGTATATCCTTTACCTCAAGTACTGCTGCCCGTGACTGGCTTCGGTTACAGCTGGCAGGACAAGAACGGGAAGTG
TTTATGGTGCTCTATCTCGATAACCAGCATCGTTTACTGGAGAGTGAAACGCTATTTGCCGGTTCGATTAACCATGTACA
GGTCCATCCCCGTGAGGTAGTGAAATCAGCGCTTCGTTTCAATGCTGCGGCCGTTGTGTTGGCGCATAACCATCCATCCG
GTGATCCGGAGCCCAGCCAATGTGACCGCAACATTACGGGCAGGCTTAAAGAAGCGCTGGCACTGGTTGATGTGAACACT
CTCGATCATCTGGTTATCGGTTCAGATGGAATTGTGTCGTTTGCAGAGCGAGGCTGGATATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(60-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.421

84.444

0.367

Multiple sequence alignment