Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY86_RS08620 Genome accession   NZ_CP028742
Coordinates   1825032..1825661 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820032..1830661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY86_RS08600 (AOY86_09065) ycbZ 1820434..1822194 (-) 1761 WP_000156492.1 AAA family ATPase -
  AOY86_RS08605 (AOY86_09070) matP 1822380..1822832 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  AOY86_RS08610 (AOY86_09075) ompA 1822908..1823948 (-) 1041 WP_001518466.1 porin OmpA -
  AOY86_RS08615 (AOY86_09085) sulA 1824304..1824813 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  AOY86_RS08620 (AOY86_09090) sxy/tfoX 1825032..1825661 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY86_RS08625 (AOY86_09095) yccS 1825624..1827786 (-) 2163 WP_148717975.1 YccS family putative transporter -
  AOY86_RS08630 (AOY86_09100) yccF 1827796..1828242 (-) 447 WP_001261236.1 YccF domain-containing protein -
  AOY86_RS08635 (AOY86_09105) helD 1828365..1830419 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287047 AOY86_RS08620 WP_000839153.1 1825032..1825661(+) (sxy/tfoX) [Escherichia coli strain A33]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287047 AOY86_RS08620 WP_000839153.1 1825032..1825661(+) (sxy/tfoX) [Escherichia coli strain A33]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment