Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY92_RS13975 Genome accession   NZ_CP028737
Coordinates   2866388..2867017 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A39     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861388..2872017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY92_RS13960 (AOY92_14860) helD 2861630..2863684 (-) 2055 WP_000420533.1 DNA helicase IV -
  AOY92_RS13965 (AOY92_14865) yccF 2863807..2864253 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AOY92_RS13970 (AOY92_14870) yccS 2864263..2866425 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AOY92_RS13975 (AOY92_14875) sxy/tfoX 2866388..2867017 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY92_RS13980 (AOY92_14880) sulA 2867236..2867745 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY92_RS13985 (AOY92_14890) ompA 2868101..2869141 (+) 1041 WP_000750416.1 porin OmpA -
  AOY92_RS13990 (AOY92_14895) matP 2869217..2869669 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AOY92_RS13995 (AOY92_14900) ycbZ 2869855..2871615 (+) 1761 WP_240757775.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=286946 AOY92_RS13975 WP_000839153.1 2866388..2867017(-) (sxy/tfoX) [Escherichia coli strain A39]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=286946 AOY92_RS13975 WP_000839153.1 2866388..2867017(-) (sxy/tfoX) [Escherichia coli strain A39]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment