Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY94_RS09195 Genome accession   NZ_CP028735
Coordinates   1959410..1960039 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1954410..1965039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY94_RS09175 (AOY94_09775) ycbZ 1954811..1956571 (-) 1761 WP_000156526.1 Lon protease family protein -
  AOY94_RS09180 (AOY94_09780) matP 1956757..1957209 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AOY94_RS09185 (AOY94_09785) ompA 1957285..1958325 (-) 1041 WP_000750416.1 porin OmpA -
  AOY94_RS09190 (AOY94_09795) sulA 1958682..1959191 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY94_RS09195 (AOY94_09800) sxy/tfoX 1959410..1960039 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY94_RS09200 (AOY94_09805) yccS 1960002..1962164 (-) 2163 WP_000875015.1 YccS family putative transporter -
  AOY94_RS09205 (AOY94_09810) yccF 1962174..1962620 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AOY94_RS09210 (AOY94_09815) helD 1962743..1964797 (+) 2055 WP_240764611.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=286915 AOY94_RS09195 WP_000839153.1 1959410..1960039(+) (sxy/tfoX) [Escherichia coli strain A41]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=286915 AOY94_RS09195 WP_000839153.1 1959410..1960039(+) (sxy/tfoX) [Escherichia coli strain A41]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment