Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY59_RS14820 Genome accession   NZ_CP028733
Coordinates   3021487..3022116 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain H2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3016487..3027116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY59_RS14805 (AOY59_15695) helD 3016729..3018783 (-) 2055 WP_000420533.1 DNA helicase IV -
  AOY59_RS14810 (AOY59_15700) yccF 3018906..3019352 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AOY59_RS14815 (AOY59_15705) yccS 3019362..3021524 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AOY59_RS14820 (AOY59_15710) sxy/tfoX 3021487..3022116 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY59_RS14825 (AOY59_15715) sulA 3022335..3022844 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY59_RS14830 (AOY59_15725) ompA 3023201..3024253 (+) 1053 WP_000750419.1 porin OmpA -
  AOY59_RS14835 (AOY59_15730) matP 3024328..3024780 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AOY59_RS14840 (AOY59_15735) ycbZ 3024966..3026726 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=286879 AOY59_RS14820 WP_000839153.1 3021487..3022116(-) (sxy/tfoX) [Escherichia coli strain H2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=286879 AOY59_RS14820 WP_000839153.1 3021487..3022116(-) (sxy/tfoX) [Escherichia coli strain H2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment